grp-bork / microbial_load_predictorLinks
R package to predict microbial loads
☆17Updated 4 months ago
Alternatives and similar repositories for microbial_load_predictor
Users that are interested in microbial_load_predictor are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- ☆32Updated 2 years ago
- ☆21Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 4 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- ☆22Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆15Updated 5 years ago
- ☆35Updated 3 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 3 years ago
- ☆20Updated 3 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- ☆12Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Updated 4 years ago
- ☆28Updated 2 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆16Updated 10 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 6 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Updated last year
- ☆32Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago