grp-bork / microbial_load_predictorLinks
R package to predict microbial loads
☆15Updated last week
Alternatives and similar repositories for microbial_load_predictor
Users that are interested in microbial_load_predictor are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆30Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- ☆32Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆14Updated 10 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 5 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆32Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- ☆22Updated 5 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- ☆29Updated 5 months ago
- Professional Comprehensive Omics Data Analysis☆20Updated 2 weeks ago
- ☆21Updated 2 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆18Updated last week
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 9 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆37Updated last week
- An algorithm for clustering metagenomic sequences.☆37Updated 2 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 months ago
- ☆17Updated 7 months ago
- ☆54Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago