grp-bork / microbial_load_predictorLinks
R package to predict microbial loads
☆16Updated 2 weeks ago
Alternatives and similar repositories for microbial_load_predictor
Users that are interested in microbial_load_predictor are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- ☆32Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- ☆21Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- ☆22Updated this week
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆11Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- ☆18Updated 3 years ago
- ☆10Updated 4 months ago
- ☆40Updated 4 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆14Updated 6 months ago
- ☆32Updated 9 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago