grp-bork / microbial_load_predictor
R package to predict microbial loads
☆14Updated 3 weeks ago
Alternatives and similar repositories for microbial_load_predictor:
Users that are interested in microbial_load_predictor are comparing it to the libraries listed below
- ☆32Updated last year
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆30Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- ☆16Updated 4 months ago
- ☆22Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 5 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆14Updated 7 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- ☆20Updated last week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- ☆16Updated 3 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- ☆29Updated 2 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- ☆10Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆20Updated 11 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆40Updated last month
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆14Updated last week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year