☆34Sep 5, 2024Updated last year
Alternatives and similar repositories for metaml
Users that are interested in metaml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Feb 3, 2023Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 6 years ago
- Deep representation learning for disease prediction based on microbiome data☆65Apr 21, 2023Updated 3 years ago
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Jun 17, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Jul 7, 2026Updated 2 weeks ago
- ☆21Dec 15, 2020Updated 5 years ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 5 months ago
- ☆19Nov 16, 2018Updated 7 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆31Apr 27, 2026Updated 2 months ago
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 7 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆38Nov 16, 2025Updated 8 months ago
- ☆18Nov 19, 2022Updated 3 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 9 months ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A workshop on microbiome analysis using Bioconductor☆16Jun 20, 2019Updated 7 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆33Aug 23, 2022Updated 3 years ago
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated last month
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆139Jul 8, 2026Updated last week
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- ☆65Feb 27, 2024Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆50Jun 6, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Code for the paper 'Identifying Modifiable Risk Factors and Their Joint Effect on Dementia Prevention'☆16Mar 9, 2023Updated 3 years ago
- ☆12May 11, 2016Updated 10 years ago
- ☆81Oct 16, 2024Updated last year
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- gutSMASH☆60Oct 3, 2025Updated 9 months ago