SegataLab / metaml
☆29Updated 6 months ago
Alternatives and similar repositories for metaml:
Users that are interested in metaml are comparing it to the libraries listed below
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆29Updated 2 months ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆28Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ☆37Updated 3 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated 9 months ago
- gutSMASH☆53Updated 3 months ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 6 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 6 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆28Updated 6 months ago
- A package to annotate protein sequences☆56Updated last month
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆67Updated 5 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- Some useful python scripts for biologists☆32Updated 4 months ago
- ☆41Updated 4 years ago
- ☆23Updated 4 years ago
- metabolic heatmap☆20Updated 5 years ago