Alternatives and similar repositories for metaml

Users that are interested in metaml are comparing it to the libraries listed below

• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 5 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆107Updated 3 weeks ago
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆99Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆33Updated 2 years ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆74Updated 10 months ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated last year
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆34Updated 2 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 8 months ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆31Updated 2 years ago
• sanger-pathogens / pathogen-informatics-training
  ☆73Updated 4 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆104Updated last year
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆63Updated 11 months ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆123Updated 2 years ago
• Golob-Minot / geneshot
  ☆29Updated last year
• wt1005203 / mNODE
  ☆15Updated 2 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• biovcnet / topic-metagenomics
  A repository for the lessons and notebooks used for Binder tutorials
  ☆19Updated 5 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆86Updated 2 weeks ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 6 months ago
• Gibbons-Lab / scfa_predictions
  Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
  ☆10Updated last year
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated this week
• nf-core / metapep
  From metagenomes to epitopes and beyond
  ☆12Updated 2 months ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated this week
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• knights-lab / MLRepo
  ☆37Updated 3 years ago