☆33Sep 5, 2024Updated 2 years ago
Alternatives and similar repositories for metaml
Users that are interested in metaml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆32Jun 10, 2020Updated 6 years ago
- Deep representation learning for disease prediction based on microbiome data☆66Apr 21, 2023Updated 3 years ago
- ☆18Feb 3, 2023Updated 3 years ago
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Aug 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Dec 15, 2020Updated 5 years ago
- ☆15Aug 15, 2026Updated last month
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 8 months ago
- ☆19Nov 16, 2018Updated 7 years ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆31Apr 27, 2026Updated 5 months ago
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 8 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- Python package for common tasks in bioinformatic.☆11Sep 24, 2025Updated last year
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 4 years ago
- A workshop on microbiome analysis using Bioconductor☆16Jun 20, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 4 years ago
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated 4 months ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆139Aug 6, 2026Updated 2 months ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆51Jun 6, 2026Updated 4 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆20Aug 4, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analyses in R and Python Using curatedMetagenomicData☆39Nov 16, 2025Updated 10 months ago
- Code for the paper 'Identifying Modifiable Risk Factors and Their Joint Effect on Dementia Prevention'☆16Mar 9, 2023Updated 3 years ago
- ☆12May 11, 2016Updated 10 years ago
- ☆86Oct 16, 2024Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- gutSMASH☆60Oct 3, 2025Updated last year
- ☆13Oct 14, 2017Updated 8 years ago