Alternatives and similar repositories for SSUsearch

Users that are interested in SSUsearch are comparing it to the libraries listed below

• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 9 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• nickloman / ebov
  Ebola virus surveillance
  ☆16Updated 8 years ago
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆28Updated 7 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 3 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆22Updated 7 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• lorenzgerber / krakenSankey
  a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
  ☆13Updated 6 years ago
• kdm9 / kWIP
  De novo estimates of genetic relatedness from next-gen sequencing data
  ☆45Updated 5 years ago
• HullUni-bioinformatics / ReproPhylo
  Reproducible Phylogenomics
  ☆22Updated 9 years ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆19Updated 8 months ago
• lpipes / tronko
  A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
  ☆24Updated 3 months ago
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 11 years ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• tanaes / snakemake_assemble
  Modular snakemake workflow for assembly-based metagenomics
  ☆10Updated 7 years ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• thomasp85 / FindMyFriends
  Fast alignment-free pangenome creation and exploration
  ☆27Updated 5 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• biocore / Platypus-Conquistador
  Confirming specific taxonomic groups within your samples.
  ☆19Updated 4 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 6 months ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆25Updated 11 months ago