A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
☆10Jan 30, 2016Updated 10 years ago
Alternatives and similar repositories for SSUsearch
Users that are interested in SSUsearch are comparing it to the libraries listed below
Sorting:
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- ☆13Jan 20, 2016Updated 10 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Updated this week
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- ☆11Jul 16, 2018Updated 7 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 10 years ago
- Simulate metacommunity dynamics in R☆15Feb 3, 2023Updated 3 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- ☆14Jan 8, 2016Updated 10 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 9 months ago
- ☆15Apr 19, 2018Updated 7 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- ☆19Dec 15, 2020Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Aug 31, 2018Updated 7 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 3 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 4 years ago