dib-lab / SSUsearch
A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
☆10Updated 9 years ago
Alternatives and similar repositories for SSUsearch:
Users that are interested in SSUsearch are comparing it to the libraries listed below
- ☆18Updated 9 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- ☆19Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- ☆26Updated last year
- blast, shmlast☆22Updated 4 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 9 years ago
- ☆22Updated 2 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- ☆11Updated 4 years ago
- Northern Arizona SNP Pipeline☆19Updated 6 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- ☆16Updated 7 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Phylogenetic plots for R and ggplot☆27Updated 12 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Mostly useful scripts and files for processing MiSeq amplicon data☆16Updated 8 years ago