sejmodha / MiscScriptsLinks
☆12Updated 6 months ago
Alternatives and similar repositories for MiscScripts
Users that are interested in MiscScripts are comparing it to the libraries listed below
Sorting:
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- ☆25Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 4 months ago
- ☆29Updated 3 years ago
- Find Unique genomic Regions☆30Updated this week
- ☆26Updated 5 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 5 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last week
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆53Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago