sejmodha / MiscScripts
☆12Updated 3 years ago
Related projects: ⓘ
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 2 years ago
- genomic alignment similarity search tool☆19Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆20Updated 2 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Bayesian reconstruction of ancient DNA fragments☆24Updated last month
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- ☆32Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆38Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- ☆27Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- ☆14Updated this week
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Quality control plotting for long reads☆10Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago