b-brankovics / grabbLinks
GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using reference sequences and NGS data.
☆13Updated 5 years ago
Alternatives and similar repositories for grabb
Users that are interested in grabb are comparing it to the libraries listed below
Sorting:
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- ☆42Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- AncestralClust☆11Updated 4 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated 4 months ago
- orthology assignment using phylogenetic and network analyses☆49Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Genome-Genome circle synteny☆25Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Updated 11 months ago
- HyPhy standalone analyses☆48Updated 3 months ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago