Error correction for Illumina RNA-seq reads
☆66Jan 4, 2026Updated 9 months ago
Alternatives and similar repositories for Rcorrector
Users that are interested in Rcorrector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆25Nov 1, 2021Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- just annotate it, dammit!☆94Aug 22, 2023Updated 3 years ago
- Understand your transcriptome assembly☆104Mar 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆80Feb 11, 2022Updated 4 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- NeatFreq/Automaton Reference-Free Coverage Reduction Distribution Package☆13Aug 1, 2014Updated 12 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Apr 14, 2026Updated 6 months ago
- CDS prediction in transcripts☆22Mar 5, 2025Updated last year
- de novo assembly of RNA-seq data using ABySS☆33Mar 10, 2026Updated 7 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy☆12Jun 4, 2020Updated 6 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TransDecoder source☆309Updated this week
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 5 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 5 years ago
- ☆16Apr 11, 2026Updated 6 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆95Apr 30, 2021Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 10 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- ☆16Sep 18, 2026Updated last month
- ☆16Apr 25, 2019Updated 7 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Jul 7, 2017Updated 9 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆18Aug 23, 2022Updated 4 years ago