Error correction for Illumina RNA-seq reads
☆68Jan 4, 2026Updated last month
Alternatives and similar repositories for Rcorrector
Users that are interested in Rcorrector are comparing it to the libraries listed below
Sorting:
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Nov 1, 2021Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Understand your transcriptome assembly☆102Mar 22, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Feb 11, 2022Updated 4 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Feb 12, 2026Updated 2 weeks ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Jan 30, 2026Updated last month
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 4 years ago
- CDS prediction in transcripts☆24Mar 5, 2025Updated 11 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- ☆16Feb 5, 2026Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 3 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- Fast and memory-efficient sequencing error corrector☆94Jan 4, 2026Updated last month