Software for clustering de novo assembled transcripts and counting overlapping reads
☆77Feb 11, 2022Updated 4 years ago
Alternatives and similar repositories for Corset
Users that are interested in Corset are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building SuperTranscripts: A linear representation of transcriptome data☆67Mar 22, 2021Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆16Apr 25, 2019Updated 6 years ago
- TD2☆37Jan 14, 2026Updated 3 months ago
- Understand your transcriptome assembly☆102Mar 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆18Aug 12, 2021Updated 4 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Oct 20, 2021Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Trinotate source code☆85Mar 14, 2024Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- PASA software☆199Feb 12, 2025Updated last year
- ☆10Apr 20, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Trinity RNA-Seq de novo transcriptome assembly☆888Feb 7, 2025Updated last year
- TransDecoder source☆304Mar 22, 2026Updated 3 weeks ago
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated 3 months ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 2 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56May 11, 2020Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package that makes linux environment modules available from R☆11Jan 13, 2023Updated 3 years ago
- Long Reads Annotation pipeline☆73Mar 31, 2022Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Updated this week
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 6 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆27Nov 14, 2025Updated 5 months ago
- Automatically exported from code.google.com/p/cdhit☆725Oct 11, 2022Updated 3 years ago