Oshlack / CorsetLinks
Software for clustering de novo assembled transcripts and counting overlapping reads
☆76Updated 3 years ago
Alternatives and similar repositories for Corset
Users that are interested in Corset are comparing it to the libraries listed below
Sorting:
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- ☆35Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago
- PHAST☆77Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Python programs for processing GFF3 files☆102Updated 2 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆105Updated 2 weeks ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- ☆81Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Trinotate source code☆84Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago