Oshlack / Corset
Software for clustering de novo assembled transcripts and counting overlapping reads
☆71Updated 3 years ago
Alternatives and similar repositories for Corset:
Users that are interested in Corset are comparing it to the libraries listed below
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- PHAST☆72Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- Dfam Transposable Element Tools Docker container.☆89Updated 2 weeks ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Python programs for processing GFF3 files☆95Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 5 months ago
- ☆35Updated 2 years ago
- Long Reads Annotation pipeline☆71Updated 3 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Nanopore data analysis in R☆39Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 6 months ago
- A catalogue of available long read sequencing data analysis tools☆77Updated 3 weeks ago