Oshlack / Corset
Software for clustering de novo assembled transcripts and counting overlapping reads
☆68Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Corset
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- web documentation for Trinotate☆48Updated last year
- Same species annotation lift over pipeline.☆96Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Genome Annotation Without Nightmares☆43Updated last year
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- PHAST☆68Updated this week
- Synteny Imager☆60Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- ☆35Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆63Updated 8 months ago
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆71Updated 6 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated 8 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago