biocorecrg / BioNextflowLinks
A collection of modules and sub-workflows for Nextflow
☆28Updated 2 months ago
Alternatives and similar repositories for BioNextflow
Users that are interested in BioNextflow are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- BigWig and BAM utilities☆100Updated last year
- Master of Pores 2☆23Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- List of IARC bioinformatics pipelines and resources☆56Updated last month
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 11 months ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆49Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 5 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago