A collection of modules and sub-workflows for Nextflow
☆29Feb 13, 2026Updated 3 months ago
Alternatives and similar repositories for BioNextflow
Users that are interested in BioNextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆20Feb 28, 2022Updated 4 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNAseq analysis pipeline☆28Apr 1, 2026Updated 2 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆12Sep 28, 2018Updated 7 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 months ago
- A JBrowse plugin for plotting multiple bigwig subtracks☆12Feb 13, 2022Updated 4 years ago
- ggplot2 geom for QR codes☆16Jul 27, 2021Updated 4 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Dec 22, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Example Nextflow pipelines and programming techniques☆108May 20, 2026Updated 3 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 10 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Apr 1, 2026Updated 2 months ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…☆19Nov 20, 2024Updated last year
- A pipeline for assemble chroloplast genome using short/long reads☆10Mar 31, 2022Updated 4 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Jan 8, 2025Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20May 25, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- Master of Pores 2☆23Dec 4, 2024Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences☆23Feb 21, 2020Updated 6 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- List of IARC bioinformatics pipelines and resources☆57Apr 23, 2026Updated last month
- How to build a complete form with Vue.js☆13May 5, 2018Updated 8 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- ☆29Feb 17, 2021Updated 5 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- ☆11Jun 29, 2021Updated 4 years ago
- Take command of your set enrichment analyses.☆23Updated this week