daisybio / TF-PrioritizerLinks
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
☆14Updated last year
Alternatives and similar repositories for TF-Prioritizer
Users that are interested in TF-Prioritizer are comparing it to the libraries listed below
Sorting:
- Junction centric alternative splicing translator☆20Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- interactive plots for differential expression analysis☆34Updated 3 months ago
- simplified cellranger for long-read data☆19Updated last month
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Updated last week
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 3 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- Frequently used commands in Bioinformatics☆21Updated 2 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- A single cell sequencing read simulator.☆33Updated 11 months ago
- Create QC and summary reports for Alevin output☆31Updated 2 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆26Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆25Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- ☆20Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆23Updated 4 years ago