Alternatives and similar repositories for TF-Prioritizer

Users that are interested in TF-Prioritizer are comparing it to the libraries listed below

• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated 4 months ago
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆21Updated 3 years ago
• LRB-IIMCB / ninetails
  An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
  ☆13Updated last month
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• tobiasrausch / nRex
  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
  ☆12Updated 2 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 6 months ago
• genomicsITER / one-liners
  Frequently used commands in Bioinformatics
  ☆21Updated 2 months ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 4 years ago
• gexijin / shinygo
  ☆33Updated 3 weeks ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated this week
• snystrom / memes
  An R interface to the MEME Suite
  ☆53Updated 5 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆56Updated last week
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆11Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆36Updated 3 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated this week
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated last week
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆69Updated this week
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆39Updated 5 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• Xinglab / rMATS-long
  ☆34Updated 3 weeks ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago