Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
☆14Mar 12, 2024Updated 2 years ago
Alternatives and similar repositories for TF-Prioritizer
Users that are interested in TF-Prioritizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Nov 11, 2023Updated 2 years ago
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks☆11Updated this week
- Nascent Transcription Processing Pipeline☆25Updated this week
- Pipeline for testing drug response prediction models in a statistically and biologically sound way.☆30Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 6 years ago
- Code associated with the paper 'Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65'☆12Jul 20, 2026Updated 3 months ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 3 months ago
- Test data for MultiQC.☆24Oct 6, 2026Updated 3 weeks ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆15Jun 9, 2026Updated 4 months ago
- DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.☆48Updated this week
- ☆20May 25, 2020Updated 6 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 7 years ago
- ☆10Dec 18, 2025Updated 10 months ago
- Source code for https://manubot.org☆24Oct 24, 2026Updated last week
- ☆12May 26, 2016Updated 10 years ago
- GRETTA (Genetic inteRaction and EssenTiality neTwork mApper): An R package for mapping genetic interaction and essentiality networks☆12Sep 24, 2026Updated last month
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams☆30Oct 22, 2026Updated last week
- Network Constrained Biclustering PyPI package☆11Aug 9, 2024Updated 2 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Apr 17, 2025Updated last year
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- A map visualization utility☆14Sep 4, 2020Updated 6 years ago
- Builds a PEP from SRA or GEO accessions☆55Oct 2, 2026Updated 3 weeks ago
- Statistical and computational analysis of the human genome☆15Sep 22, 2021Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated 5 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆29Jul 10, 2023Updated 3 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated last year
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Updated this week
- Documentation, readme's, FAQs, SOPs, etc...☆12Oct 15, 2026Updated 2 weeks ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Updated this week
- ☆12Feb 27, 2023Updated 3 years ago
- A list of inspirational and thought-provoking reads about women who code.☆10Nov 20, 2025Updated 11 months ago