Alternatives and similar repositories for denovogui

Users that are interested in denovogui are comparing it to the libraries listed below

• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 7 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆42Updated 8 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆15Updated 3 months ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆20Updated 2 years ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 2 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆39Updated 10 months ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆36Updated 4 years ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 3 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆23Updated this week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆38Updated 3 weeks ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆47Updated 2 years ago
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆42Updated 2 weeks ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆21Updated this week
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated 3 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆48Updated last month
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 4 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆64Updated last year
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆44Updated 4 months ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 2 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 2 months ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated 3 months ago
• pFindStudio / pFind3
  ☆28Updated 7 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• mwang87 / GNPS_MASST
  ☆14Updated this week
• CompOmics / peptide-shaker
  Interpretation of proteomics identification results
  ☆50Updated 2 weeks ago
• FredHutch / maxquant-pipeline
  MaxQuant Automated Pipeline
  ☆23Updated 5 years ago
• Noble-Lab / crema
  Confidence Estimation for Mass Spectrometry Proteomics
  ☆13Updated 3 months ago