Alternatives and similar repositories for denovogui

Users that are interested in denovogui are comparing it to the libraries listed below

• CompOmics / peptide-shaker
  Interpretation of proteomics identification results
  ☆48Updated 2 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆14Updated 3 weeks ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 7 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆39Updated 5 months ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆48Updated this week
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated last week
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆26Updated 5 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 2 months ago
• pFindStudio / pFind3
  ☆27Updated 4 months ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆19Updated 2 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆35Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• PHOENIXcenter / pi-HelixNovo
  ☆11Updated 2 weeks ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 2 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆21Updated this week
• PayneLab / ProteomicsEducation
  ☆33Updated last week
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆34Updated 4 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆49Updated last week
• FredHutch / maxquant-pipeline
  MaxQuant Automated Pipeline
  ☆22Updated 4 years ago
• mobiusklein / glycresoft
  An LC-MS/MS glycan and glycopeptide search engine
  ☆12Updated 4 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 3 months ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆17Updated last week
• YuanyueLi / group-dia
  Group-DIA, a software for analyzing multiple DIA data files
  ☆13Updated 8 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 10 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆48Updated last month