Graphical user interface for de novo sequencing of tandem mass spectra
☆15Mar 11, 2024Updated 2 years ago
Alternatives and similar repositories for denovogui
Users that are interested in denovogui are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- ☆10Jan 15, 2020Updated 6 years ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Highly adaptable common interface for proteomics search and de novo engines☆48Aug 15, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Open source Java library for computational proteomics☆37Apr 12, 2026Updated 3 months ago
- Interpretation of proteomics identification results☆55Aug 1, 2026Updated last week
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.☆34Aug 25, 2020Updated 5 years ago
- ☆15Oct 16, 2023Updated 2 years ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Apr 22, 2026Updated 3 months ago
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Jul 2, 2026Updated last month
- Collisional cross-section prediction for modified and multiconformational peptides☆14Jul 16, 2026Updated 3 weeks ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- Rocker image for metabolomics data analysis☆14Oct 25, 2025Updated 9 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 3 months ago
- ☆14Sep 3, 2024Updated last year
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Nov 10, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Perl/R pipeline for plotting metagenes☆39Mar 21, 2026Updated 4 months ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- 🌐 Unipept frontend for metaproteomics data analysis☆26Updated this week
- Presentation materials for the 2016 Berkeley C++ Summit☆14Oct 20, 2016Updated 9 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆12May 11, 2021Updated 5 years ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- ☆32May 27, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆42Jun 10, 2026Updated 2 months ago
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 9 years ago
- ☆16May 27, 2026Updated 2 months ago
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆20Oct 23, 2025Updated 9 months ago
- 基于大模型搭建的聊天机器人,同时支持 微信公众号、企业微信应用、飞书、钉钉 等接入,可选择GPT3.5/GPT-4o/GPT4.0/ Claude/文心一言/讯飞星火/通义千问/ Gemini/GLM-4/Claude/Kimi/LinkAI,能处理文本、语音和图片,访问操…☆11Feb 4, 2025Updated last year
- Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology☆18May 3, 2022Updated 4 years ago