Alternatives and similar repositories for MOP2

Users that are interested in MOP2 are comparing it to the libraries listed below

• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆36Updated 2 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 7 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆26Updated last week
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆27Updated this week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆34Updated last week
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 10 months ago
• KolmogorovLab / minda
  ☆18Updated 3 weeks ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 8 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• WGLab / LongReadSum
  ☆17Updated last month
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆32Updated 6 years ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• srbehera / DRAGEN_Analysis
  ☆31Updated 11 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 7 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated last week
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago