apredeus / 10k_genomes
Various scripts for efficient processing of 10k Salmonella genomes
☆13Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for 10k_genomes
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- whole genome MLST analysis☆38Updated 6 months ago
- ☆18Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- ☆45Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆25Updated last week
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- Metagenomics Workshop☆28Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆18Updated last year
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- de.NBI Nanopore Training Course☆19Updated 2 years ago
- ☆17Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- ☆57Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- ☆34Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- ☆24Updated 5 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆38Updated 4 years ago
- Prophage Activity Estimator☆26Updated 5 months ago
- Gene-flank analysis tool☆26Updated 6 months ago