Various scripts for efficient processing of 10k Salmonella genomes
☆16Sep 16, 2021Updated 4 years ago
Alternatives and similar repositories for 10k_genomes
Users that are interested in 10k_genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆11Dec 1, 2020Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- ☆10Jun 21, 2015Updated 10 years ago
- TreeBeST: Tree Building guided by Species Tree☆15Feb 17, 2011Updated 15 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆16Jul 24, 2022Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 2 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- KiCad files for the Katana60 revision 2 PCB☆10Apr 19, 2020Updated 5 years ago
- ☆38Apr 14, 2022Updated 3 years ago
- ☆10Apr 16, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆10Jan 24, 2023Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆23Dec 6, 2018Updated 7 years ago
- WhatsGNU: a tool for identifying proteomic novelty☆15Jan 27, 2025Updated last year
- A better git CLI experience☆14Aug 24, 2023Updated 2 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆16Updated this week
- http://huttenhower.sph.harvard.edu/waafle☆23Feb 26, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated last year
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- For DEMO purposes - Containerised Rstudio instance running behind an Nginx proxy, using Docker Compose☆12Dec 25, 2018Updated 7 years ago
- An Amazing Shiny App☆16Sep 9, 2021Updated 4 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- ☆53May 11, 2021Updated 4 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Classifier for metagenomic sequences☆30Nov 12, 2018Updated 7 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- A LaTeX document class to create small hand-outs (flyers)☆13Mar 12, 2024Updated 2 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆20Apr 18, 2022Updated 3 years ago