Alternatives and similar repositories for ImmuCellAI

Users that are interested in ImmuCellAI are comparing it to the libraries listed below

• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 10 months ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated 3 weeks ago
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 8 months ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 2 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• XSLiuLab / TCfinder
  ☆9Updated 9 months ago
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆25Updated last month
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 7 months ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆44Updated 10 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆20Updated 7 months ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• multitalk / miRTalk
  Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
  ☆14Updated 2 months ago
• ChengLiLab / SCALE
  A tissue-specific single-cell biological age model
  ☆11Updated last year
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• dosorio / SCORPION
  Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…
  ☆9Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• xiebb123456 / AutomaticCellTypeIdentification
  ☆21Updated 3 years ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• paulgeeleher / pRRophetic2
  ☆9Updated this week
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆28Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 2 months ago
• jcolinge / BulkSignalR
  BulkSignalR
  ☆20Updated 3 months ago