lydiaMyr / ImmuCellAILinks
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
β15Updated 3 months ago
Alternatives and similar repositories for ImmuCellAI
Users that are interested in ImmuCellAI are comparing it to the libraries listed below
Sorting:
- π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R packageβ33Updated 3 months ago
- Pseudotime Analysis for Bulk Dataβ16Updated last year
- β20Updated 4 years ago
- The source code of web server TIP, including example data.β19Updated 6 years ago
- β30Updated 7 years ago
- β10Updated 3 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Toolsβ36Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3β43Updated 2 weeks ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkersβ20Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".β18Updated 6 years ago
- β58Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencingβ35Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020β32Updated 4 years ago
- β15Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.β16Updated 3 years ago
- β48Updated last year
- Human brain, >200,000 nucleiβ24Updated 4 years ago
- Calculating Tumor microenvironment scoreβ29Updated 2 years ago
- Dichotomous of innate immune landscapeβ17Updated 6 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analysesβ22Updated 4 years ago
- Bayesian network plot for the enrichment analysis resultsβ65Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq dataβ27Updated 3 years ago
- Code to reproduce TNBC analysis and figuresβ24Updated 3 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters anβ¦β43Updated 3 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patientsβ12Updated 10 months ago
- A database of useful gene signatures for single-cell analysisβ27Updated 4 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ceβ¦β31Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysisβ23Updated 10 months ago
- β47Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVIβ¦β49Updated 3 years ago