lydiaMyr / ImmuCellAILinks
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
β15Updated 8 months ago
Alternatives and similar repositories for ImmuCellAI
Users that are interested in ImmuCellAI are comparing it to the libraries listed below
Sorting:
- Pseudotime Analysis for Bulk Dataβ18Updated last year
- π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R packageβ50Updated last week
- The source code of web server TIP, including example data.β20Updated 6 years ago
- β10Updated 8 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020β33Updated 4 years ago
- β48Updated last year
- β62Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Toolsβ39Updated last week
- Calculating Tumor microenvironment scoreβ29Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing dataβ36Updated 2 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters anβ¦β47Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkersβ21Updated 3 years ago
- β16Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analysesβ22Updated 4 years ago
- Human brain, >200,000 nucleiβ23Updated 4 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".β18Updated 6 years ago
- A database of useful gene signatures for single-cell analysisβ28Updated 8 months ago
- β16Updated 4 years ago
- β30Updated 7 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysisβ23Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3β45Updated 4 months ago
- β13Updated 8 years ago
- β32Updated 4 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ceβ¦β33Updated 2 months ago
- β20Updated 4 years ago
- BulkSignalRβ26Updated 6 months ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptβ¦β10Updated 2 years ago
- Dichotomous of innate immune landscapeβ17Updated 6 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohortsβ14Updated 2 years ago
- Code to reproduce TNBC analysis and figuresβ25Updated 3 years ago