lydiaMyr / ImmuCellAILinks
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
β15Updated 6 months ago
Alternatives and similar repositories for ImmuCellAI
Users that are interested in ImmuCellAI are comparing it to the libraries listed below
Sorting:
- π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R packageβ35Updated 6 months ago
- Pseudotime Analysis for Bulk Dataβ18Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Toolsβ39Updated 7 months ago
- The source code of web server TIP, including example data.β20Updated 6 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkersβ20Updated 3 years ago
- β48Updated last year
- Calculating Tumor microenvironment scoreβ29Updated 2 years ago
- A database of useful gene signatures for single-cell analysisβ27Updated 6 months ago
- An R package for visualising cell-cell interactionsβ43Updated last year
- β30Updated 7 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3β44Updated 3 months ago
- β32Updated 3 years ago
- Code to reproduce TNBC analysis and figuresβ25Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020β33Updated 4 years ago
- β10Updated 6 months ago
- β61Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptβ¦β10Updated last year
- β37Updated 3 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".β18Updated 6 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ceβ¦β31Updated last week
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancerβ15Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysisβ23Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters anβ¦β44Updated 3 years ago
- β37Updated 5 years ago
- β16Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq dataβ29Updated 3 years ago
- R package for Bioconductor submissionβ37Updated 2 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencingβ35Updated 5 years ago
- Human brain, >200,000 nucleiβ24Updated 4 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolutionβ13Updated 2 years ago