lydiaMyr / ImmuCellAILinks
ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data
☆15Updated 3 months ago
Alternatives and similar repositories for ImmuCellAI
Users that are interested in ImmuCellAI are comparing it to the libraries listed below
Sorting:
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 months ago
- Pseudotime Analysis for Bulk Data☆16Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- The source code of web server TIP, including example data.☆19Updated 6 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆20Updated 4 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 9 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- ☆58Updated last year
- ☆10Updated 3 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- ☆47Updated last year
- A database of useful gene signatures for single-cell analysis☆25Updated 3 months ago
- Data-driven Network-based Bayesian Inference of Drivers☆43Updated last week
- ☆30Updated 7 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated last year
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆48Updated 5 years ago
- ☆15Updated 3 years ago
- R package☆22Updated last year
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated last week
- Hierarchical Cell Annotation☆25Updated 9 months ago