Quantify and interpret divers of variation in multilevel gene expression experiments
☆17Sep 23, 2026Updated last month
Alternatives and similar repositories for variancePartition
Users that are interested in variancePartition are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulation and data analysis code for dream paper☆13Jun 5, 2020Updated 6 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆88Jul 30, 2026Updated 3 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated last month
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunks☆17Sep 29, 2026Updated last month
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆38Sep 23, 2026Updated last month
- ☆12Dec 10, 2025Updated 10 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆27Aug 25, 2026Updated 2 months ago
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated last year
- Modify environment variables in a running screen or tmux session☆12Jan 15, 2012Updated 14 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆39Jan 22, 2026Updated 9 months ago
- SANTO: a coarse-to-fine stitching and alignment method for spatial omics☆16Jun 27, 2024Updated 2 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 7 months ago
- Count ratio uncertainty modeling base linear regression☆16Sep 23, 2026Updated last month
- ☆13Aug 9, 2022Updated 4 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 7 months ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Facilitating the use of Deep Visual Proteomics☆23Oct 26, 2026Updated last week
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- R package to analyze recursions in movement trajectories☆12Jul 19, 2024Updated 2 years ago
- Memory-efficient analysis of single-cell data.☆125Oct 21, 2026Updated last week
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Oct 14, 2026Updated 2 weeks ago
- Assign gene names to regions in a BED file☆25May 3, 2023Updated 3 years ago
- Facemash is a website created by Mark Zuckerberg in 2003, where people had to choose between two photos. This is clone of facemash in the…☆11Feb 13, 2017Updated 9 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 9 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆20Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Mar 4, 2021Updated 5 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆75May 10, 2026Updated 5 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Oct 7, 2026Updated 3 weeks ago
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Oct 25, 2026Updated last week
- Proteomics analysis workflows☆10Sep 3, 2026Updated 2 months ago
- Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments☆11Sep 27, 2026Updated last month