braingeneers / SIMSLinks
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
☆10Updated 3 weeks ago
Alternatives and similar repositories for SIMS
Users that are interested in SIMS are comparing it to the libraries listed below
Sorting:
- ☆17Updated 2 years ago
- ☆18Updated 2 weeks ago
- ☆19Updated last year
- A continually expanding collection of RNA-seq tools☆52Updated this week
- ☆17Updated last year
- DNA methylation studies of mammalian species☆37Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆53Updated 4 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆39Updated 5 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- A networks analysis pipeline for RNASeq time series data☆14Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 5 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated last week
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆32Updated 5 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- PTa Analysis TOolkit☆13Updated this week
- SCENIC+ analyses☆17Updated 2 years ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆34Updated 8 months ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- polyApipe☆18Updated 7 months ago
- A database of T-cell receptor sequences☆11Updated 2 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆35Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 2 months ago