SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
☆12Apr 8, 2026Updated 3 months ago
Alternatives and similar repositories for SIMS
Users that are interested in SIMS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 单细胞测序的高级教程☆12Apr 12, 2021Updated 5 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 3 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12May 13, 2025Updated last year
- ☆30Apr 5, 2025Updated last year
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- ☆12Apr 13, 2020Updated 6 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- ☆18Dec 4, 2025Updated 7 months ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- ☆14May 31, 2025Updated last year
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- CGMega: dissecting cancer gene module with explainable graph attention network☆19Jul 25, 2024Updated 2 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 7 months ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- stageR package☆13May 8, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21May 14, 2026Updated 2 months ago
- ☆33Nov 6, 2022Updated 3 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 3 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 6 months ago
- ☆14Mar 7, 2024Updated 2 years ago
- Pangenome file formats based on SQLite☆16Updated this week
- ☆15Aug 16, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Sep 28, 2022Updated 3 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆18May 23, 2026Updated 2 months ago
- ☆21Jul 10, 2026Updated 2 weeks ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 10 months ago
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆24Apr 27, 2026Updated 2 months ago