SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
☆10Dec 3, 2025Updated 3 months ago
Alternatives and similar repositories for SIMS
Users that are interested in SIMS are comparing it to the libraries listed below
Sorting:
- 单细胞测序的高级教程☆11Apr 12, 2021Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Mar 8, 2023Updated 2 years ago
- ☆28Apr 5, 2025Updated 11 months ago
- we collected Gram-stained bacteria images from lower respiratory tract specimens of patients with lung infections in Chinese PLA General…☆12Jan 18, 2024Updated 2 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- Code for WHO Global Tuberculosis Report 2023☆14Jan 8, 2024Updated 2 years ago
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆10Jun 25, 2024Updated last year
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- PDBClean helps create a curated ensemble of molecular structures☆16Feb 20, 2026Updated last week
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- Computational predictor of protein intrinsic disorder and its functions☆10Dec 4, 2023Updated 2 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆47Feb 16, 2026Updated 2 weeks ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- ☆12May 17, 2022Updated 3 years ago
- Public version for DistPepFold☆10Jul 17, 2025Updated 7 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- This repository gathers the NNAIMGUI code along with some instructions and readme files.☆11Mar 22, 2024Updated last year
- Unbiased single-cell transcriptomic data cell type identification☆14May 7, 2024Updated last year
- An Avogadro plugin with a gui to create packmol input files and run packmol from within Avogadro.☆11Mar 3, 2010Updated 16 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2…☆19May 28, 2025Updated 9 months ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆10Nov 24, 2023Updated 2 years ago
- App for serotonergic targets☆12Jan 8, 2026Updated last month
- ☆10Mar 29, 2025Updated 11 months ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- ☆13May 31, 2025Updated 9 months ago
- Ensemble Integration: a customizable pipeline for generating multi-modal, heterogeneous ensembles☆21Oct 30, 2024Updated last year
- Automatically exported from code.google.com/p/pyplif☆10Nov 23, 2018Updated 7 years ago
- FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.☆13Oct 20, 2025Updated 4 months ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Mar 7, 2018Updated 7 years ago
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated last month
- Zero-shot clinical trial matching with LLMs☆15Mar 1, 2025Updated last year
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆26Jun 27, 2025Updated 8 months ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- ☆13Oct 9, 2024Updated last year
- PTa Analysis TOolkit☆14Updated this week
- Mica is a web portal for epidemiological study consortia.☆12Updated this week
- ☆13Dec 5, 2024Updated last year