SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
☆13Apr 8, 2026Updated 6 months ago
Alternatives and similar repositories for SIMS
Users that are interested in SIMS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 单细胞测序的高级教程☆13Apr 12, 2021Updated 5 years ago
- ☆10Dec 11, 2024Updated last year
- scKAN: Interpretable Single-cell Analysis for Cell-type-specific Gene Discovery and Drug Repurposing via Kolmogorov-Arnold Networks☆12Sep 25, 2025Updated last year
- SCENIC+ analyses☆20Sep 26, 2023Updated 3 years ago
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆26Jul 12, 2023Updated 3 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- my CV using pagedown☆11Mar 17, 2021Updated 5 years ago
- An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas☆11Nov 3, 2023Updated 3 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- ☆12Oct 12, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- ☆31Apr 5, 2025Updated last year
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- Library for constructing pinch graphs and cactus graphs☆11May 7, 2024Updated 2 years ago
- A set of libraries to enable AI apps/agents to control frontend web apps by exposing state and actions as tools using MCP☆13Updated this week
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15Oct 15, 2026Updated 2 weeks ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Find locations of k-mers☆13Dec 6, 2025Updated 10 months ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- ☆29May 20, 2023Updated 3 years ago
- ☆10Jun 1, 2026Updated 5 months ago
- ☆17Dec 4, 2025Updated 10 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated 3 weeks ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆13Apr 13, 2020Updated 6 years ago
- ☆14May 31, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq☆11Jun 6, 2024Updated 2 years ago
- Recognizing HGT Events in Assemblies☆10May 12, 2026Updated 5 months ago
- ☆12May 13, 2025Updated last year