Alternatives and similar repositories for SIMS

Users that are interested in SIMS are comparing it to the libraries listed below

• interactivereport / RNASequest
  ☆18Updated last week
• getzlab / CPTAC_PanCan_PTM_2023
  ☆17Updated 2 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated 4 months ago
• dzhakparov / GeneSelectR
  ☆23Updated last year
• pinellolab / CRISPR-SURF
  ☆17Updated last year
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆30Updated 2 months ago
• shorvath / MammalianMethylationConsortium
  DNA methylation studies of mammalian species
  ☆40Updated 2 weeks ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 11 months ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆57Updated 8 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆19Updated last year
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆33Updated 5 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• igbb-popescu-lab / NetSeekR
  A networks analysis pipeline for RNASeq time series data
  ☆14Updated 5 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆24Updated 3 years ago
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆18Updated 2 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆64Updated 3 weeks ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆27Updated 2 years ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆86Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 3 weeks ago
• GuoBioinfoLab / TCRdb
  A database of T-cell receptor sequences
  ☆11Updated 6 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆20Updated 5 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆43Updated 3 months ago
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆36Updated last year
• gagneurlab / absplice
  ☆39Updated 7 months ago
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆20Updated 6 months ago