SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
☆11Apr 8, 2026Updated this week
Alternatives and similar repositories for SIMS
Users that are interested in SIMS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 单细胞测序的高级教程☆12Apr 12, 2021Updated 5 years ago
- 一条命令就能安装精心打磨的工作流、命令、代理、MCP服务器和钩子☆32Oct 29, 2025Updated 5 months ago
- UMAP in pure MLX for Apple Silicon. 30x faster than umap-learn.☆42Mar 5, 2026Updated last month
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated 9 months ago
- Identifying cell subpopulational differences among single-cell biospecimens☆16Sep 27, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- ☆28Apr 5, 2025Updated last year
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Mar 27, 2026Updated 2 weeks ago
- ☆12Apr 13, 2020Updated 6 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆23Sep 2, 2025Updated 7 months ago
- A Python library for processing genomes with ease☆49Mar 7, 2026Updated last month
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- ☆14May 31, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CGMega: dissecting cancer gene module with explainable graph attention network☆19Jul 25, 2024Updated last year
- stageR package☆13Feb 28, 2023Updated 3 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 3 months ago
- ☆20Mar 27, 2026Updated 2 weeks ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- MCP server for the NCBI E-utilities API. Search PubMed, fetch article metadata and full text, generate citations, explore MeSH terms, and…☆76Updated this week
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Mar 7, 2024Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆15Aug 16, 2025Updated 7 months ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 4 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 8 years ago
- A DIY guide to gene co-expression network analysis☆13Mar 31, 2025Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Dec 24, 2022Updated 3 years ago