bioFAM / mofax
Work with trained factor models in Python
☆31Updated 5 months ago
Alternatives and similar repositories for mofax:
Users that are interested in mofax are comparing it to the libraries listed below
- Multi-omics factor analysis v2☆43Updated 5 months ago
- ☆51Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆63Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 3 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆20Updated last month
- .h5mu files interface for Seurat☆28Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆24Updated 2 months ago
- Dorothea package in Python☆11Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- ☆21Updated 4 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- Single cell omics biology annotations☆50Updated 2 weeks ago
- Multiview Intercellular SpaTial modeling framework☆52Updated 11 months ago
- ☆42Updated 4 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- FISH Iterative Cell Typing☆11Updated 11 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 6 months ago
- ☆21Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- ☆24Updated 2 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Test genes for Spatial Variation☆14Updated 3 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆48Updated 8 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago