Alternatives and similar repositories for mofax

Users that are interested in mofax are comparing it to the libraries listed below

• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆46Updated 8 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 10 months ago
• lilab-bcb / harmony-pytorch
  ☆55Updated last month
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆29Updated 7 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated this week
• rajewsky-lab / spacemake
  ☆44Updated last week
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated 2 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆61Updated last week
• Center-for-Health-Data-Science / multiDGD
  ☆25Updated last month
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆72Updated 4 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 8 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 6 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last week
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆44Updated last week
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆53Updated last month
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 7 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆45Updated 10 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆59Updated last year
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆100Updated 2 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆47Updated this week
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 5 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆61Updated last month
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 7 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆99Updated last month
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆27Updated 3 weeks ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆119Updated this week
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated last month