Alternatives and similar repositories for pyMultiOmics

Users that are interested in pyMultiOmics are comparing it to the libraries listed below

• pachterlab / fastQpick
  ☆26Updated 4 months ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• DanHanh / scLinear
  ☆19Updated 11 months ago
• interactivereport / xOmicsShiny
  R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
  ☆30Updated 2 weeks ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆23Updated 3 weeks ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 3 months ago
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 7 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• 123xiaochen / VCFshiny
  ☆29Updated 8 months ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated last month
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆16Updated 7 months ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 5 months ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 5 months ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆28Updated 3 weeks ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆14Updated last week
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 4 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 4 months ago
• BennyStrobes / Watershed
  Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
  ☆18Updated 2 years ago
• fogellab / multiWGCNA
  an R package for deep mining gene co-expression networks in multi-trait expression data
  ☆19Updated last week
• lichen-lab / MDeep
  ☆15Updated 5 years ago
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆24Updated 2 months ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• schultzelab / Shiny-Seq
  Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
  ☆21Updated 6 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆24Updated 2 years ago
• cellatlas / human
  ☆43Updated 7 months ago