Alternatives and similar repositories for pyMultiOmics

Users that are interested in pyMultiOmics are comparing it to the libraries listed below

• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆31Updated 3 weeks ago
• himelmallick / IntegratedLearner
  Integrated Machine Learning for Multi-omics Classification and Prediction
  ☆24Updated last week
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 3 months ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 7 months ago
• Kumquatum / GWENA
  Gene Co-expression Network analysis pipeline
  ☆25Updated 2 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 10 months ago
• fogellab / multiWGCNA
  an R package for deep mining gene co-expression networks in multi-trait expression data
  ☆21Updated this week
• collinwa / MCFA
  ☆20Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• allielarocco / Microarray-Analysis
  Microarray Analysis Pipeline in Python
  ☆19Updated 6 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆26Updated last year
• friedue / course_RNA-seq2019
  ☆35Updated 3 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 4 years ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆15Updated last week
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 7 months ago
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆30Updated last week
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆16Updated 9 months ago
• kuanrongchan / STAGES
  ☆36Updated 6 months ago
• schultzelab / Shiny-Seq
  Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
  ☆21Updated 6 years ago
• TheJacksonLaboratory / JAXBD2K-ShortCourse
  This repository contains course materials from JAX-BD2K workshop.
  ☆32Updated 6 years ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆36Updated 3 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 2 months ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆13Updated 2 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆44Updated this week
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆65Updated 4 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated 11 months ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 10 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago