Python toolbox for multi-omics data mapping and analysis
☆26Apr 13, 2023Updated 2 years ago
Alternatives and similar repositories for pyMultiOmics
Users that are interested in pyMultiOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- Single cell Morphology Quality Control (coSMicQC)☆10Updated this week
- The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.☆25Aug 8, 2025Updated 7 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- ☆12Jan 31, 2023Updated 3 years ago
- A curated list of awesome Molecular Modeling And Drug Discovery 🔥☆11Jul 21, 2022Updated 3 years ago
- Python library for large-scale targeted metabolomics.☆23Mar 2, 2026Updated 3 weeks ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆23Jan 23, 2026Updated 2 months ago
- ☆10Aug 29, 2012Updated 13 years ago
- genome sized sequences clustering☆17Dec 29, 2020Updated 5 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated last month
- Open Targets Platform web applications☆11Updated this week
- Registry for scverse ecosystem packages☆34Mar 16, 2026Updated last week
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- Work with trained factor models in Python☆39Oct 22, 2024Updated last year
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆17Feb 3, 2026Updated last month
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆91Oct 28, 2024Updated last year
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆17Updated this week
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Oct 12, 2022Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- ☆19Jan 16, 2024Updated 2 years ago
- Benchmark agents on BioML tasks☆65Sep 14, 2025Updated 6 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆66Apr 5, 2024Updated last year
- ☆13Aug 15, 2025Updated 7 months ago
- Application of pan-genome for population☆116Oct 26, 2025Updated 4 months ago
- A command-line interface and python module for R's GSVA bioconductor package☆13Jul 8, 2018Updated 7 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 3 months ago
- pipeline for dog WGS alignment☆15Jun 27, 2023Updated 2 years ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- Nextflow pipeline for Targeted-Learning of genetic effects☆12Updated this week