Immunodynamics-Engel-Lab / msiflowLinks
collection of mass spectrometry imaging workflows
☆17Updated 5 months ago
Alternatives and similar repositories for msiflow
Users that are interested in msiflow are comparing it to the libraries listed below
Sorting:
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
 - Framework for image and flow cytometry analysis☆30Updated 3 weeks ago
 - An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
 - SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
 - EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
 - Interactive visualization of spatial omics data☆70Updated last week
 - ☆34Updated last year
 - TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
 - Multiple-choice microscopy pipeline☆137Updated last month
 - Morphological features from images and masks made easy.☆37Updated last week
 - Find profile pairs and compute metrics between them.☆20Updated last week
 - A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
 - Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
 - Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
 - Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 2 months ago
 - MethodsJ2☆14Updated 3 years ago
 - scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆97Updated last month
 - ☆32Updated 3 months ago
 - A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
 - Development of PICASSO plugin for napari☆16Updated 2 years ago
 - ☆18Updated last year
 - ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
 - An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 3 weeks ago
 - Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
 - Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated this week
 - Deep learning based spot detection for FISH images.☆25Updated last month
 - QuPath extension for Cellsparse☆19Updated 5 months ago
 - Toolbox for the analysis of smFISH images.☆67Updated 2 years ago
 - A plugin to visualise 3D spatial single cell omics☆21Updated last week
 - multimodal whole slide image registration in a graph structure☆95Updated last year