cytomining / coSMicQCLinks
Single cell Morphology Quality Control (coSMicQC)
☆10Updated this week
Alternatives and similar repositories for coSMicQC
Users that are interested in coSMicQC are comparing it to the libraries listed below
Sorting:
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆105Updated this week
- Interactive visualization of spatial omics data☆75Updated last week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated last week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated last week
- ☆88Updated this week
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated 2 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆84Updated 3 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- Flow & mass cytometry analytics.☆58Updated this week
- Find profile pairs and compute retrieval metrics between them.☆21Updated 2 weeks ago
- Multiple-choice microscopy pipeline☆145Updated 2 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆61Updated last week
- ☆59Updated 2 months ago
- ☆12Updated 5 years ago
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆212Updated last month
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Updated 3 months ago
- CellProfiler tutorial pipelines and images☆99Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- ☆24Updated 2 weeks ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆149Updated last month
- ☆29Updated last year