Single cell Morphology Quality Control (coSMicQC)
☆10Mar 18, 2026Updated last week
Alternatives and similar repositories for coSMicQC
Users that are interested in coSMicQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Mar 17, 2026Updated last week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- Python package for processing image-based profiling data☆135Mar 17, 2026Updated last week
- Find profile pairs and compute retrieval metrics between them.☆22Mar 1, 2026Updated 3 weeks ago
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆23Mar 13, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Compendium of tools for the Imaging Platform☆15Mar 9, 2026Updated 2 weeks ago
- Morphological profiling using deep learning☆124Oct 19, 2024Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 5 years ago
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated last year
- ☆94Mar 12, 2026Updated last week
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Nextflow language support for Visual Studio Editor☆37Updated this week
- Python toolbox for multi-omics data mapping and analysis☆26Apr 13, 2023Updated 2 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- Registry for scverse ecosystem packages☆34Mar 16, 2026Updated last week
- Software for dynamic spherical harmonic analysis☆10May 1, 2020Updated 5 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Implementation of "Accurate classification of protein subcellular localization from high throughput microscopy images using deep learning…☆13Oct 19, 2022Updated 3 years ago
- Predicting Cell Health with Morphological Profiles☆39Jan 26, 2022Updated 4 years ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆177Mar 14, 2026Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108Mar 16, 2026Updated last week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- ☆17Jan 14, 2021Updated 5 years ago
- Code and data of the "Multi-domain adversarial learning" paper, Schoenauer-Sebag et al., accepted at ICLR 2019☆38Jan 20, 2021Updated 5 years ago
- 🎨 A simple beautiful LaTeX theme for books, thesis, note.☆23Feb 22, 2022Updated 4 years ago
- Fast Music Indexing PoC based on Shazam☆34May 18, 2019Updated 6 years ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated 11 months ago
- Scripts associated with the 2023 Open Problems competition☆11Nov 23, 2023Updated 2 years ago
- Nextflow pipeline for Targeted-Learning of genetic effects☆12Updated this week
- Set of Dockerfile to build a ready-to-use OMERO server☆15Oct 5, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting☆12Jun 3, 2024Updated last year
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation☆18Sep 10, 2025Updated 6 months ago
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated last month
- Work with trained factor models in Python☆39Oct 22, 2024Updated last year
- Dose response curves and DIP rates for cell proliferation data in Python☆14Mar 13, 2026Updated last week
- A Fake Avatar Generator for FakerPHP☆15Feb 24, 2022Updated 4 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Mar 16, 2026Updated last week