Multi-omics factor analysis v2
☆64Apr 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for mofapy2
Users that are interested in mofapy2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Work with trained factor models in Python☆40Oct 22, 2024Updated last year
- Multi-Omics Factor Analysis☆399Feb 23, 2026Updated 2 months ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated 4 months ago
- ☆28Apr 15, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆14Aug 17, 2023Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- ☆35May 1, 2026Updated 2 weeks ago
- ☆27Oct 23, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 months ago
- SKATE R Utilities☆10Mar 7, 2026Updated 2 months ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 9 months ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Nov 22, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 10 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆267Apr 26, 2026Updated 3 weeks ago
- ☆15Apr 7, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 2 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- ☆40Feb 24, 2026Updated 2 months ago
- ☆17Jan 29, 2026Updated 3 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆76Oct 28, 2025Updated 6 months ago
- Multi-Omics Factor Analysis☆266Sep 30, 2020Updated 5 years ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆135Mar 2, 2026Updated 2 months ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 3 months ago
- ☆94Aug 29, 2025Updated 8 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise☆38Sep 21, 2023Updated 2 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆206Apr 15, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- pseudobulking on an AnnData object☆35Mar 14, 2025Updated last year
- Single-cell disease relevance score (scDRS)☆185Sep 2, 2025Updated 8 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆78Mar 28, 2026Updated last month
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated last year