Multi-omics factor analysis v2
☆59Jan 26, 2026Updated last month
Alternatives and similar repositories for mofapy2
Users that are interested in mofapy2 are comparing it to the libraries listed below
Sorting:
- Work with trained factor models in Python☆39Oct 22, 2024Updated last year
- Multi-Omics Factor Analysis☆387Feb 23, 2026Updated 3 weeks ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- ☆22Feb 25, 2026Updated 3 weeks ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated 2 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- ☆32Mar 10, 2026Updated last week
- ☆27Oct 23, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- SKATE R Utilities☆10Mar 7, 2026Updated 2 weeks ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 7 months ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Nov 22, 2022Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 8 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆259Feb 13, 2026Updated last month
- ☆15Nov 24, 2025Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆433Mar 9, 2026Updated last week
- ☆39Feb 24, 2026Updated 3 weeks ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆191Jan 30, 2026Updated last month
- ☆17Jan 29, 2026Updated last month
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Multi-Omics Factor Analysis☆261Sep 30, 2020Updated 5 years ago
- Python implementation of the Slingshot pseudotime algorithm☆71Oct 28, 2025Updated 4 months ago
- ☆92Aug 29, 2025Updated 6 months ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆130Mar 2, 2026Updated 2 weeks ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise☆37Sep 21, 2023Updated 2 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆201Updated this week
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Mar 9, 2026Updated last week
- Single-cell disease relevance score (scDRS)☆177Sep 2, 2025Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆76Nov 2, 2025Updated 4 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆53Feb 19, 2026Updated last month
- SCASA: Single cell transcript quantification tool☆22Nov 24, 2023Updated 2 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 10 months ago