bioFAM / mofapy2Links
Multi-omics factor analysis v2
☆45Updated 7 months ago
Alternatives and similar repositories for mofapy2
Users that are interested in mofapy2 are comparing it to the libraries listed below
Sorting:
- Work with trained factor models in Python☆33Updated 7 months ago
- ☆54Updated last week
- ☆44Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Multimodal Data (.h5mu) implementation for Python☆98Updated this week
- Multiview Intercellular SpaTial modeling framework☆55Updated last year
- Molecular interactions inference from single-cell multi-omics data☆24Updated 2 weeks ago
- ☆43Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- .h5mu files interface for Seurat☆29Updated last year
- ☆35Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- Single cell omics biology annotations☆51Updated last month
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆49Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- A python package for chromVAR☆28Updated 2 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Code and documentation for the curation of cellxgene datasets☆44Updated this week
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated this week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆62Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆117Updated 9 months ago