bioFAM / mofapy2Links
Multi-omics factor analysis v2
☆49Updated 11 months ago
Alternatives and similar repositories for mofapy2
Users that are interested in mofapy2 are comparing it to the libraries listed below
Sorting:
- Work with trained factor models in Python☆35Updated 11 months ago
- ☆56Updated 4 months ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 3 weeks ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆104Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- ☆26Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆45Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- ☆37Updated 7 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Single-cell multi-omics integration using Optimal Transport☆46Updated last month
- A python package for chromVAR☆30Updated 2 years ago
- pseudobulking on an AnnData object☆34Updated 6 months ago
- ☆44Updated 11 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆25Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Pipeline to run scE2G☆28Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago