gokceneraslan / fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
☆16Updated 3 years ago
Alternatives and similar repositories for fit_nbinom:
Users that are interested in fit_nbinom are comparing it to the libraries listed below
- Fit generalized linear models in python.☆27Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆43Updated 7 months ago
- Multi-omics factor analysis v2☆44Updated 5 months ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated last year
- Work with trained factor models in Python☆31Updated 5 months ago
- Fishers Exact Test for Python (Cython)☆65Updated 3 weeks ago
- ☆28Updated 2 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆22Updated 3 weeks ago
- pCMF R package☆14Updated 6 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Deep exponential families for single-cell data.☆21Updated 5 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated 3 weeks ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year
- Universal RObust Peak Annotator☆15Updated last year
- A python package for chromVAR☆27Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆48Updated 9 months ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Multimodal Data (.h5mu) implementation for Python☆92Updated 3 weeks ago