gokceneraslan / fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
☆16Updated 3 years ago
Alternatives and similar repositories for fit_nbinom:
Users that are interested in fit_nbinom are comparing it to the libraries listed below
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- Work with trained factor models in Python☆31Updated 3 months ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆55Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- ☆28Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- pCMF R package☆14Updated 5 years ago
- Fit generalized linear models in python.☆27Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- Data and analysis for the Splatter paper☆28Updated 7 years ago
- Multi-omics factor analysis v2☆40Updated 4 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆53Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Scalable inference of gene regulatory networks using Apache Spark and XGBoost☆19Updated 7 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆47Updated 7 months ago
- Single-cell Hierarchical Poisson Factorization☆67Updated 2 years ago
- ☆28Updated 4 years ago
- A python package for chromVAR☆27Updated last year
- Assembles a graph manifold from time series single-cell RNAseq data☆17Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Fishers Exact Test for Python (Cython)☆64Updated 5 months ago
- ☆49Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Universal RObust Peak Annotator☆15Updated last year
- Unified knowledge-driven network inference from omics data☆32Updated last week