Alternatives and similar repositories for MOFA2

Users that are interested in MOFA2 are comparing it to the libraries listed below

• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆249Updated 4 years ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆261Updated 5 months ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆412Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆292Updated last month
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆304Updated last year
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆230Updated 2 weeks ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆419Updated this week
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆313Updated 6 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆290Updated 3 weeks ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆246Updated last month
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆500Updated 3 weeks ago
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆431Updated last month
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆213Updated last year
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆279Updated 2 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆330Updated this week
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆391Updated this week
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆213Updated 2 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆345Updated 2 weeks ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆289Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆193Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆198Updated 3 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆268Updated last year
• rcastelo / GSVA
  Gene set variation analysis
  ☆224Updated 4 months ago
• cole-trapnell-lab / monocle3
  ☆401Updated last month
• BioinformaticsFMRP / TCGAbiolinks
  TCGAbiolinks
  ☆331Updated this week
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆216Updated 3 weeks ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆236Updated last week
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆271Updated this week
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆115Updated this week
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆88Updated 9 months ago