Alternatives and similar repositories for MOFA2

Users that are interested in MOFA2 are comparing it to the libraries listed below

• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆249Updated 4 years ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆263Updated 6 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆295Updated 2 months ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆414Updated 2 months ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆248Updated this week
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆421Updated 3 weeks ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆503Updated 2 weeks ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆308Updated last year
• immunomind / immunarch
  🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
  ☆323Updated last week
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆432Updated 2 weeks ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆331Updated this week
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆116Updated this week
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆230Updated last month
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆292Updated last month
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆314Updated 6 months ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆394Updated 2 weeks ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆281Updated 3 months ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆214Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆200Updated 4 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆347Updated last week
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆192Updated 4 years ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆250Updated last year
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆271Updated last year
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆213Updated 2 years ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆346Updated 9 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆224Updated last week
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆194Updated 4 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆291Updated 2 years ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆225Updated 4 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆195Updated 2 months ago