cwieder / PathIntegrateLinks
PathIntegrate Python package for pathway-based multi-omics data integration
☆16Updated 7 months ago
Alternatives and similar repositories for PathIntegrate
Users that are interested in PathIntegrate are comparing it to the libraries listed below
Sorting:
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆14Updated last week
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- Single sample pathway analysis tools for omics data☆12Updated 7 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 2 months ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Updated last year
- Network Visualization using both GUI and Programming☆28Updated 3 weeks ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Time-Course Multi-Omics data integration☆25Updated last year
- ☆19Updated 11 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- ☆13Updated 2 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆19Updated last week
- ☆17Updated 2 weeks ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Updated 7 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- FunctionaL Omics Processing platform☆13Updated 11 months ago
- ☆27Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Updated 3 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- MeSH Enrichment and Semantic analyses☆12Updated 2 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated 4 months ago
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆13Updated 3 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆15Updated last month
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago