PathIntegrate Python package for pathway-based multi-omics data integration
☆18Nov 9, 2024Updated last year
Alternatives and similar repositories for PathIntegrate
Users that are interested in PathIntegrate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- asari, metabolomics data preprocessing☆60Mar 21, 2026Updated 2 weeks ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Feb 20, 2026Updated last month
- ☆14Aug 10, 2022Updated 3 years ago
- ☆11Jul 18, 2025Updated 8 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 6 months ago
- ☆11Oct 25, 2023Updated 2 years ago
- ☆21Mar 2, 2026Updated last month
- Goslin is the Grammar on succinct lipid nomenclature.☆13Mar 26, 2026Updated 2 weeks ago
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 10 months ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- ☆23Jul 9, 2025Updated 9 months ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jan 20, 2026Updated 2 months ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- R for Mass Spectrometry documentation☆15Nov 19, 2025Updated 4 months ago
- SPACE: STRING proteins as complementary embeddings☆38Mar 26, 2026Updated 2 weeks ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- R Interface to the ClassyFire REST API☆14Feb 21, 2025Updated last year
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- ☆11Feb 20, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 6 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆14Mar 18, 2026Updated 3 weeks ago
- ☆12Apr 6, 2021Updated 5 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- 🧬 Gene analysis toolkit based on R☆61Jan 6, 2025Updated last year
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- REEV: Explanation and Evaluation of Variants☆11Mar 30, 2026Updated last week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Rocker image for metabolomics data analysis☆13Oct 25, 2025Updated 5 months ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- ☆17Nov 21, 2022Updated 3 years ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆15Jun 1, 2023Updated 2 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Mar 2, 2026Updated last month