bhklab / PharmacoGxLinks
R package to analyze large-scale pharmacogenomic datasets.
☆71Updated 2 weeks ago
Alternatives and similar repositories for PharmacoGx
Users that are interested in PharmacoGx are comparing it to the libraries listed below
Sorting:
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆59Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Tools for manipulating annotated data matrices☆92Updated 4 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 2 weeks ago
- R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.☆27Updated 4 months ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆29Updated 10 months ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆80Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Explore and download data from the recount3 project☆36Updated 3 weeks ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 6 months ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 3 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 7 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Course Materials for Genomics Data Mining☆22Updated 3 weeks ago