Alternatives and similar repositories for PharmacoGx:

Users that are interested in PharmacoGx are comparing it to the libraries listed below

• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆33Updated this week
• greenelab / RNAseq_titration_results
  Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
  ☆35Updated last year
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆75Updated 6 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆65Updated 6 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆100Updated 2 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆60Updated 4 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆74Updated last year
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆71Updated 8 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆22Updated last month
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆73Updated last year
• bhklab / genefu
  R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
  ☆25Updated last month
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆78Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆141Updated 10 months ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆42Updated 4 years ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆42Updated last year
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆102Updated 2 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆88Updated 3 years ago
• theislab / AutoGeneS
  ☆57Updated 3 years ago
• ebecht / MCPcounter
  ☆55Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated last year
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆35Updated 3 years ago
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆20Updated 4 years ago
• iscb-dc-rsg / 2016-summer-workshop
  ISCB DC Area Regional Student Group - Summer 2016 Workshop
  ☆48Updated 8 years ago
• giannimonaco / ABIS
  ☆59Updated 4 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆124Updated last month
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆54Updated 4 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆81Updated last month