R package to analyze large-scale pharmacogenomic datasets.
☆71Feb 9, 2026Updated last month
Alternatives and similar repositories for PharmacoGx
Users that are interested in PharmacoGx are comparing it to the libraries listed below
Sorting:
- ☆10Oct 18, 2021Updated 4 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Aug 23, 2018Updated 7 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 4 months ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- R package☆22Dec 16, 2023Updated 2 years ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Sep 24, 2023Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Aug 22, 2025Updated 6 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Jul 10, 2023Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- ☆22Feb 5, 2025Updated last year
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 7 months ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Mar 7, 2020Updated 6 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 2 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- ☆22Jan 28, 2021Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 2 weeks ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Jan 6, 2022Updated 4 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 5 months ago
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python☆18Dec 14, 2016Updated 9 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆38Feb 10, 2026Updated 3 weeks ago
- ☆10Jan 21, 2023Updated 3 years ago
- An R package to time somatic mutations☆66Dec 12, 2020Updated 5 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 10 months ago
- An R package for drug response prediction and drug-gene association prediction.☆25May 9, 2025Updated 10 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated 2 months ago
- A Python package for pharmacogenomics (PGx) research☆84Jan 4, 2026Updated 2 months ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Feb 14, 2024Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated 9 months ago