bhklab / PharmacoGx
R package to analyze large-scale pharmacogenomic datasets.
☆66Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for PharmacoGx
- ☆60Updated 4 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆20Updated 2 years ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆72Updated last year
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆79Updated 2 weeks ago
- An R interface to enrichR☆77Updated 7 months ago
- Easily download publicly available GWAS summary statistics.☆73Updated 11 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- TCGA-Assembler 2☆74Updated 6 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆75Updated last year
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆34Updated last year
- ☆54Updated 2 years ago
- Immunology-related bioinformatics data and tools☆69Updated 6 months ago
- Code for biostar tutorials - mostly R and Perl☆50Updated 3 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆86Updated 5 years ago
- Tools for manipulating annotated data matrices☆85Updated 3 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 3 weeks ago
- R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.☆25Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆99Updated 2 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Updated 2 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆77Updated 8 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- ☆58Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- R client for the OmniPath web service☆109Updated this week