sbslee / pypgx
A Python package for pharmacogenomics (PGx) research
☆66Updated 5 months ago
Alternatives and similar repositories for pypgx:
Users that are interested in pypgx are comparing it to the libraries listed below
- A small-RNA sequencing analysis pipeline☆77Updated last week
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- Software program for checking sample matching for NGS data☆126Updated 6 months ago
- phasing and Allele Specific Expression from RNA-seq☆110Updated 6 months ago
- Frequently used commands in bioinformatics☆52Updated 3 months ago
- Workflows for converting between sequence data formats☆37Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆175Updated this week
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆138Updated this week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Characterization of Germline variants☆98Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆83Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆68Updated this week
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 7 months ago
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 10 months ago
- ☆82Updated 6 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- Microsatellite instability (MSI) detection for tumor only data.☆97Updated 8 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆85Updated last week
- VCF-kit: Assorted utilities for the variant call format☆126Updated 5 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆143Updated this week
- Somatic structural variant caller for long-read data☆53Updated this week