bhklab / PharmacoDBLinks
Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
☆46Updated 7 years ago
Alternatives and similar repositories for PharmacoDB
Users that are interested in PharmacoDB are comparing it to the libraries listed below
Sorting:
- ARCHS4 RNA-seq processing scripts and web server pages.☆60Updated 4 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆42Updated last month
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 7 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆71Updated last month
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 2 weeks ago
- 3D hotspot mutation proximity analysis tool☆49Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆29Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆52Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 2 weeks ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Scalable Tool for Gene Network Reverse Engineering☆24Updated last year
- Python API for Xena Hub☆53Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- ☆43Updated 2 years ago