bhklab / PharmacoDB
Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
☆46Updated 6 years ago
Alternatives and similar repositories for PharmacoDB:
Users that are interested in PharmacoDB are comparing it to the libraries listed below
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆25Updated last week
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆55Updated 4 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 2 weeks ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆49Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- ☆47Updated 2 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 4 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆25Updated last year
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆68Updated 2 months ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆27Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆36Updated 8 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 6 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 3 months ago
- ☆47Updated 2 years ago