CancerRxGene / gdsctools
Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
☆34Updated 2 years ago
Related projects: ⓘ
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated 10 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- A collection of useful functions for bioinformatics data analysis☆17Updated 2 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆34Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- Summary statistics for repertoires☆16Updated last year
- R package for analysing proteomics data☆47Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆51Updated 3 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 4 years ago
- ☆19Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆36Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆56Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆25Updated 2 months ago
- ☆17Updated 4 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 3 months ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆19Updated 3 years ago
- ☆38Updated 9 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆20Updated 3 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆14Updated last year
- ☆46Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated last year
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆12Updated 2 years ago
- Cancer Dependency Map package☆24Updated last month