Alternatives and similar repositories for gdsctools:

Users that are interested in gdsctools are comparing it to the libraries listed below

• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆25Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• krassowski / drug-disease-profile-matching
  Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
  ☆16Updated 4 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 4 months ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆22Updated 5 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆21Updated 3 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 4 years ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆54Updated 4 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆35Updated 4 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 6 months ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆61Updated 3 years ago
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆36Updated 5 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆19Updated 7 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆43Updated last year
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆11Updated 2 months ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated last year
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• greenelab / RNAseq_titration_results
  Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
  ☆35Updated last year
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆19Updated 4 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 3 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆23Updated 7 months ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• HelenaLC / muscat-comparison
  ☆12Updated 8 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆22Updated 2 months ago