krassowski / drug-disease-profile-matchingLinks
Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
☆18Updated 5 years ago
Alternatives and similar repositories for drug-disease-profile-matching
Users that are interested in drug-disease-profile-matching are comparing it to the libraries listed below
Sorting:
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆60Updated 4 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 7 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 3 weeks ago
- Fast motif matching in R☆46Updated last year
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆29Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Signac☆25Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- ☆43Updated 2 years ago
- ☆69Updated 7 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- ☆20Updated 3 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 3 weeks ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 7 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago