🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
☆163Dec 25, 2025Updated 7 months ago
Alternatives and similar repositories for sigminer
Users that are interested in sigminer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Quantifying copy number signatures from absolute copy number profiles☆29Jul 23, 2025Updated last year
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆499Feb 25, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆162Feb 12, 2026Updated 6 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆102Oct 4, 2024Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Oct 12, 2024Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Jul 19, 2024Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Jul 1, 2026Updated last month
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆118May 5, 2026Updated 3 months ago
- Explore the cancer relevance of your gene list☆56Aug 11, 2026Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆548Aug 3, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆80Jul 29, 2026Updated 2 weeks ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆188Aug 4, 2026Updated 2 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Nov 22, 2022Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 3 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆79Sep 12, 2024Updated last year
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆311Mar 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jul 17, 2026Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ASCAT R package☆204Feb 12, 2026Updated 6 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123Jul 21, 2026Updated 3 weeks ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆239Updated this week
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆149Jul 19, 2021Updated 5 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago