ShixiangWang / sigminerLinks
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
☆157Updated 2 weeks ago
Alternatives and similar repositories for sigminer
Users that are interested in sigminer are comparing it to the libraries listed below
Sorting:
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 9 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 2 months ago
- RNA-seq workflow: exploratory analysis and differential expression☆81Updated 2 years ago
- R data package for annotating/converting Gene IDs☆166Updated 5 months ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆175Updated last month
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Simplify functional enrichment results☆121Updated last year
- An R interface to enrichR☆93Updated 10 months ago
- R package containing useful functions for mutational signature analysis☆87Updated this week
- ☆73Updated 3 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Updated 4 months ago
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 6 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆94Updated last year
- Content for the OSCA Book.☆66Updated 2 years ago
- DNA methylation analysis notes from Ming Tang☆92Updated 6 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆127Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 3 weeks ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆98Updated 4 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Devel repository for minfi☆64Updated last year
- A factor analysis package☆104Updated 13 years ago
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- Easily download publicly available GWAS summary statistics.☆77Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 10 months ago