Alternatives and similar repositories for sigminer

Users that are interested in sigminer are comparing it to the libraries listed below

• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆96Updated 10 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated 2 years ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆174Updated this week
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 5 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆91Updated 6 months ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆194Updated last year
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 8 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated 11 months ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆78Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆167Updated last month
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆99Updated 3 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆160Updated last year
• hansenlab / minfi
  Devel repository for minfi
  ☆61Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆158Updated last year
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆94Updated last year
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆81Updated last month
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆122Updated 8 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆110Updated last week
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆137Updated last year
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated this week
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated last month
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆104Updated 2 years ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 4 months ago
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆122Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆65Updated last week