Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
☆39Oct 16, 2026Updated last week
Alternatives and similar repositories for PANOPLY
Users that are interested in PANOPLY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jul 6, 2023Updated 3 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Sep 28, 2026Updated last month
- Imputing proteomics data using deep learning models☆35Jul 8, 2026Updated 3 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆16Updated this week
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 7 months ago
- ☆10Oct 18, 2021Updated 5 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆13Apr 5, 2023Updated 3 years ago
- Python Client Library for the G2P Portal API☆15Oct 7, 2026Updated 3 weeks ago
- Repository for mzIdentML and the corresponding examples☆27Oct 19, 2026Updated last week
- Proteomics Toolset for Integrative Data Analysis☆28Oct 7, 2025Updated last year
- Python tools for proteogenomics analysis toolkit☆19May 23, 2026Updated 5 months ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆15Oct 19, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆17Oct 22, 2026Updated last week
- Converter functions for the MSstats package☆12Updated this week
- R package to analyze large-scale pharmacogenomic datasets.☆72Aug 4, 2026Updated 2 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Jun 10, 2024Updated 2 years ago
- Single cell proteomics data processing☆34Oct 2, 2026Updated 3 weeks ago
- Toolkits for NCBI Pubmed☆29Nov 22, 2024Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆131Oct 22, 2026Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆69Oct 12, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 4 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆51Jul 13, 2026Updated 3 months ago
- A tool for large scale omics datasets evaluation☆27Jun 14, 2023Updated 3 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 9 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆345Feb 10, 2026Updated 8 months ago
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- Discoverability for gene search☆13Feb 6, 2023Updated 3 years ago
- Rebuilding QUILTS in Python.☆10Jul 14, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multi-Omics Peptide Generator☆33Nov 6, 2025Updated 11 months ago
- Analysis platform for large-scale dose-dependent data☆36Nov 25, 2025Updated 11 months ago
- The Kinase Library: a Global Atlas of the Human Protein Kinome☆23Sep 3, 2026Updated last month
- ☆15Aug 22, 2023Updated 3 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆26Oct 15, 2026Updated 2 weeks ago
- Absolute quantification package based on quantms.io☆16Sep 16, 2026Updated last month
- Proteogenomics database-generation tool for protein haplotypes and variants☆13Jun 19, 2025Updated last year