broadinstitute / PANOPLYLinks
Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
☆37Updated this week
Alternatives and similar repositories for PANOPLY
Users that are interested in PANOPLY are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆49Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last month
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 8 months ago
- Shiny app for making and annotating Volcano plots☆24Updated 11 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- The repo for LFQ-Analyst☆30Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- ☆60Updated 4 years ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆35Updated 5 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- An r package for proteomics data Analysis, developed from DEP.☆30Updated 4 months ago
- ☆64Updated last year
- An S3 data object and framework for common quantitative proteomic analyses☆42Updated last month
- Integration ribosome profiling - mass spectrometry☆15Updated last week
- ☆48Updated 3 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- Prize-Collecting Steiner Forests for Interactomes☆60Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 11 months ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆27Updated last year
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆24Updated 6 years ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆104Updated 2 years ago