broadinstitute / PANOPLY
Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
☆36Updated this week
Alternatives and similar repositories for PANOPLY
Users that are interested in PANOPLY are comparing it to the libraries listed below
Sorting:
- R package for analysing proteomics data☆49Updated 2 years ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated last week
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆32Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated last month
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆26Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Shiny app for making and annotating Volcano plots☆23Updated 8 months ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆24Updated 5 months ago
- ☆54Updated last year
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- The repo for LFQ-Analyst☆30Updated 9 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- Mass spectrometry imaging toolbox☆55Updated 4 months ago
- Methods for label-free mass spectrometry proteomics☆15Updated last month
- Cancer Dependency Map package☆30Updated 9 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 2 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- Unified access to several second-generation deconvolution methods☆71Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- ☆18Updated 3 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆14Updated last year
- Integration ribosome profiling - mass spectrometry☆14Updated 2 months ago