Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
☆39Oct 1, 2026Updated last week
Alternatives and similar repositories for PANOPLY
Users that are interested in PANOPLY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jul 6, 2023Updated 3 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆15Jun 25, 2026Updated 3 months ago
- Imputing proteomics data using deep learning models☆35Jul 8, 2026Updated 3 months ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Sep 28, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 7 months ago
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 4 months ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- Python tools for proteogenomics analysis toolkit☆19May 23, 2026Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆130Updated this week
- ☆17Jul 2, 2026Updated 3 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Jun 10, 2024Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkits for NCBI Pubmed☆30Nov 22, 2024Updated last year
- A tool for large scale omics datasets evaluation☆27Jun 14, 2023Updated 3 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 9 years ago
- Single cell proteomics data processing☆33Oct 2, 2026Updated last week
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 4 years ago
- A list of tools on proteomics using deep learning☆110May 14, 2026Updated 4 months ago
- Proteomics Toolset for Integrative Data Analysis☆27Oct 7, 2025Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆13Jun 19, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆15Aug 22, 2023Updated 3 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 6 months ago
- ☆12Jan 14, 2023Updated 3 years ago
- The Kinase Library: a Global Atlas of the Human Protein Kinome☆23Sep 3, 2026Updated last month
- Repository for mzIdentML and the corresponding examples☆27May 6, 2026Updated 5 months ago
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 7 months ago
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- ☆28Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Oct 2, 2026Updated last week
- Facilitating the use of Deep Visual Proteomics☆18Sep 16, 2026Updated 3 weeks ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆47Jun 12, 2026Updated 3 months ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 6 months ago
- Python package for virtual screening of generated molecules using autodock-vina and tensorflow☆14Mar 22, 2021Updated 5 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆69Jan 6, 2026Updated 9 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week