Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
☆38Mar 31, 2026Updated last week
Alternatives and similar repositories for PANOPLY
Users that are interested in PANOPLY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jul 6, 2023Updated 2 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 30, 2026Updated last week
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 6 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Oct 2, 2025Updated 6 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single cell proteomics data processing☆31Feb 9, 2026Updated last month
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 7 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Mar 31, 2026Updated last week
- Imputing proteomics data using deep learning models☆33Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated last year
- R package to analyze large-scale pharmacogenomic datasets.☆71Mar 25, 2026Updated 2 weeks ago
- Toolkits for NCBI Pubmed☆29Nov 22, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last week
- A tool for large scale omics datasets evaluation☆23Jun 14, 2023Updated 2 years ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- A list of tools on proteomics using deep learning☆107May 5, 2024Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 9 months ago
- An easy-to-use and interactive web application for FragPipe☆13Mar 8, 2026Updated last month
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jan 14, 2023Updated 3 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆19Mar 31, 2026Updated last week
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- Repository for mzIdentML and the corresponding examples☆26Jan 16, 2026Updated 2 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 6 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 8 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆68Updated this week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆17Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 3 weeks ago
- ☆15Apr 26, 2022Updated 3 years ago
- ☆15May 30, 2025Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Mar 25, 2026Updated 2 weeks ago
- Repository in Support of EAGLE Submission☆22Oct 11, 2025Updated 5 months ago
- ☆15Aug 22, 2023Updated 2 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆46Apr 1, 2025Updated last year