Alternatives and similar repositories for oncoPredict:

Users that are interested in oncoPredict are comparing it to the libraries listed below

• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated last month
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆28Updated last year
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated 11 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆31Updated 9 months ago
• califano-lab / single-cell-pipeline
  ☆45Updated 5 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆66Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆35Updated last year
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆20Updated 2 years ago
• bischofp / single_cell_lung_adenocarcinoma
  ☆30Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆35Updated 2 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated last week
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 4 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆44Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated 9 months ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆74Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆55Updated 4 months ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆61Updated 3 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆11Updated 11 months ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆20Updated 4 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago