☆10Oct 18, 2021Updated 4 years ago
Alternatives and similar repositories for PGx_Guidelines
Users that are interested in PGx_Guidelines are comparing it to the libraries listed below
Sorting:
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 4 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆71Feb 9, 2026Updated 3 weeks ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Jan 9, 2026Updated last month
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 5 months ago
- ☆15Oct 10, 2023Updated 2 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated 9 months ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆17Feb 2, 2026Updated last month
- Genomic Data Science Specialization helps in learning genomic data science including Python, R, Bioconductor, and Galaxy. This is offered…☆13Jun 26, 2015Updated 10 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆18May 31, 2024Updated last year
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 2 weeks ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction a…☆17Nov 17, 2021Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)☆20Nov 28, 2024Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Toolbox package for organizing and working with TCGA data☆28Dec 11, 2025Updated 2 months ago
- ☆26Dec 4, 2019Updated 6 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Feb 5, 2026Updated last month
- A Python package for pharmacogenomics (PGx) research☆84Jan 4, 2026Updated 2 months ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28May 9, 2024Updated last year
- A high throughput automated drug discovery pipeline.☆29Mar 16, 2018Updated 7 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆72Oct 10, 2024Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Apr 28, 2025Updated 10 months ago
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆35Oct 21, 2025Updated 4 months ago
- ☆31Aug 9, 2021Updated 4 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- notebook repository☆12Jan 17, 2022Updated 4 years ago