☆15Sep 29, 2025Updated 5 months ago
Alternatives and similar repositories for superfold
Users that are interested in superfold are comparing it to the libraries listed below
Sorting:
- Generative diverse protein backbones by protein language model☆34Updated this week
- Code for running BinderFlow☆62Nov 21, 2025Updated 3 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- ☆47Sep 25, 2024Updated last year
- ☆10Feb 3, 2026Updated last month
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- ☆15Apr 3, 2025Updated 11 months ago
- ☆12Jun 16, 2023Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆49Feb 20, 2026Updated last week
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- ☆17Dec 23, 2024Updated last year
- Protein representation and design under a single training scheme☆24Updated this week
- ☆11Apr 21, 2023Updated 2 years ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 5 years ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- PyPEF – Pythonic Protein Engineering Framework☆14Feb 24, 2026Updated last week
- ☆30Oct 7, 2025Updated 4 months ago
- ☆65Apr 8, 2025Updated 10 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆70Feb 23, 2026Updated last week
- ☆15Sep 5, 2025Updated 5 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- ☆21Oct 9, 2025Updated 4 months ago
- ☆15Feb 18, 2026Updated last week
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆64Oct 31, 2025Updated 4 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 4 months ago
- ☆16Dec 10, 2024Updated last year
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- MAGPIE☆16May 5, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Jul 25, 2023Updated 2 years ago
- ☆15Jun 3, 2025Updated 9 months ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Feb 17, 2025Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated 11 months ago
- ☆40Sep 17, 2024Updated last year
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆40Updated this week
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆27Feb 18, 2026Updated last week
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago