Alternatives and similar repositories for superfold

Users that are interested in superfold are comparing it to the libraries listed below

• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆16Updated 2 years ago
• davidekim / parametric_barrels
  Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.
  ☆13Updated last month
• meilerlab / probabilities_design
  ☆15Updated 9 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 5 months ago
• HannesStark / CodonMPNN
  ☆29Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated last month
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 9 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆56Updated 2 weeks ago
• bwicky / oligomer_hallucination
  ☆36Updated 2 years ago
• matsagad / mres-project
  Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.
  ☆11Updated last year
• PKUliujl / GeoSeqBuilder
  ☆32Updated 10 months ago
• RosettaCommons / demos
  Demos of many Rosetta applications
  ☆20Updated 6 months ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆16Updated 3 months ago
• ComputArtCMCG / ProBID-NET
  ☆16Updated 6 months ago
• bwicky / SAPP_DMX
  ☆26Updated 4 months ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆18Updated last month
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 9 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆46Updated 3 weeks ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 4 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• Gonglab-THU / GDFold2
  ☆17Updated last year
• ld139 / ApoDock_public
  Code for ApoDock
  ☆21Updated 8 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• SimonKitSangChu / EsmTherm
  ☆13Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated 2 years ago