Alternatives and similar repositories for superfold:

Users that are interested in superfold are comparing it to the libraries listed below

• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆21Updated last year
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆18Updated 3 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 3 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 months ago
• RosettaCommons / FvHallucinator
  ☆27Updated 2 years ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆33Updated 6 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆23Updated this week
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 8 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆24Updated 4 months ago
• PKUliujl / GeoSeqBuilder
  ☆26Updated last month
• davidekim / parametric_barrels
  ☆12Updated last month
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆45Updated 2 weeks ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆21Updated 5 years ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• RosettaCommons / demos
  Demos of many Rosetta applications
  ☆17Updated 5 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• Furman-Lab / PatchMAN
  ☆26Updated 7 months ago
• matsagad / mres-project
  Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.
  ☆10Updated 3 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆43Updated 3 months ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• coreyhowe999 / RSO
  ☆21Updated 5 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆16Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆30Updated 2 weeks ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated 2 weeks ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 2 weeks ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆32Updated 4 months ago