alexiscourbet / Computational-design-of-protein-nanomachinesLinks
Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational mechanics in de novo protein assemblies"
☆10Updated 3 years ago
Alternatives and similar repositories for Computational-design-of-protein-nanomachines
Users that are interested in Computational-design-of-protein-nanomachines are comparing it to the libraries listed below
Sorting:
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- Generative diverse protein backbones by protein language model☆32Updated 7 months ago
- Code for the paper "Learning to engineer protein flexibility".☆18Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- ☆70Updated 3 months ago
- Some scripts that I keep using over and over.☆19Updated last week
- ☆36Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆26Updated last year
- protein structure generation with sparse all-atom denoising models☆34Updated last month
- ☆43Updated 10 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆38Updated last month
- code for SeqDance/ESMDance, biophysics-informed protein language models☆38Updated 3 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- Modelling protein conformational landscape with Alphafold☆51Updated 3 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆36Updated 2 weeks ago
- ☆13Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆47Updated last month
- ☆33Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 8 months ago
- ☆34Updated 2 weeks ago
- A benchmark for 3D biomolecular structure prediction models☆59Updated 2 months ago
- ☆38Updated 10 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆18Updated 4 months ago
- ☆27Updated 7 months ago
- Structure prediction of alternative protein conformations☆76Updated 4 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆35Updated 3 months ago