alexiscourbet / Computational-design-of-protein-nanomachinesLinks
Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational mechanics in de novo protein assemblies"
☆10Updated 3 years ago
Alternatives and similar repositories for Computational-design-of-protein-nanomachines
Users that are interested in Computational-design-of-protein-nanomachines are comparing it to the libraries listed below
Sorting:
- Code for the paper "Learning to engineer protein flexibility".☆22Updated last month
- Generative diverse protein backbones by protein language model☆34Updated 2 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆60Updated 7 months ago
- ☆27Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- ☆72Updated 9 months ago
- Some scripts that I keep using over and over.☆21Updated 6 months ago
- ☆37Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆58Updated last month
- protein structure generation with sparse all-atom denoising models☆54Updated last month
- Modelling protein conformational landscape with Alphafold☆54Updated 4 months ago
- ☆46Updated last year
- Code for designing biased protein states☆35Updated last month
- Structure prediction of alternative protein conformations☆80Updated 10 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated 2 months ago
- ☆30Updated last year
- ☆17Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Updated 2 years ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆46Updated last month
- Metrics to evaluate distributional coverage of generative models of protein structures.☆18Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- Pretrained METL models with minimal dependencies☆16Updated 3 months ago
- Potts model-based protein sequence design☆78Updated 3 weeks ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Updated 4 months ago
- ☆39Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆36Updated 9 months ago
- ☆13Updated 2 years ago
- ☆13Updated last year