☆21Mar 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for countsplit
Users that are interested in countsplit are comparing it to the libraries listed below
Sorting:
- ☆14May 1, 2024Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated last week
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- ☆13Dec 14, 2023Updated 2 years ago
- ImageJ macro for microglia morphology analysis☆17Updated this week
- ☆14Aug 30, 2025Updated 6 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆17Jun 15, 2023Updated 2 years ago
- ☆16Nov 5, 2024Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last month
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Sep 4, 2025Updated 6 months ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆20Jul 13, 2021Updated 4 years ago
- Public repository for the R package intRinsic☆14Dec 17, 2025Updated 3 months ago
- A versatile interface to the knockoff methodology.☆26Apr 1, 2022Updated 3 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Mar 11, 2026Updated last week
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 2 months ago
- Repo for code from the SBC paper☆24Feb 27, 2019Updated 7 years ago
- A better, faster way to count guides in CRISPR screens.☆34Apr 11, 2025Updated 11 months ago
- Implementation of the matrixStats API for sparse matrices☆54Apr 2, 2025Updated 11 months ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆18Nov 9, 2024Updated last year
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 11 months ago
- R package for specialised analysis of single cell data☆41Oct 14, 2022Updated 3 years ago
- ☆13Mar 13, 2026Updated last week
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Apr 13, 2024Updated last year
- ☆33Mar 13, 2026Updated last week
- A command-line interface and python module for R's GSVA bioconductor package☆13Jul 8, 2018Updated 7 years ago
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year