Alternatives and similar repositories for countsplit

Users that are interested in countsplit are comparing it to the libraries listed below

• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆26Updated 6 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 2 months ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆27Updated last year
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆31Updated 2 months ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated 3 months ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 8 months ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 4 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• kieranrcampbell / switchde
  Inference of switch-like differential expression along single-cell trajectories
  ☆21Updated 8 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• genesofeve / projectR
  ☆63Updated 8 months ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated last year
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated last month
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆68Updated last year
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆52Updated 4 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 4 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated 2 years ago
• limfuxing / ruvIIInb
  This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…
  ☆18Updated last year
• BennyStrobes / surge
  ☆12Updated last year