Alternatives and similar repositories for countsplit

Users that are interested in countsplit are comparing it to the libraries listed below

• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆26Updated 6 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• genesofeve / projectR
  ☆63Updated 7 months ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆26Updated last year
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆18Updated 4 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆46Updated last month
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated 2 years ago
• BennyStrobes / surge
  ☆12Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 7 months ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 4 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 3 weeks ago
• pachterlab / BHGP_2022
  ☆21Updated 3 years ago
• msraredon / Connectome
  ☆30Updated 3 years ago
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆22Updated last year
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• limfuxing / ruvIIInb
  This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…
  ☆18Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated 3 months ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 3 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆31Updated 2 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago