anna-neufeld / countsplitLinks
☆21Updated last year
Alternatives and similar repositories for countsplit
Users that are interested in countsplit are comparing it to the libraries listed below
Sorting:
- post-clustering differential expression test☆35Updated 6 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 10 months ago
- Hierarchical classification of cells☆23Updated 10 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆30Updated last month
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated 9 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 3 weeks ago
- Pairwise Hierarchical Model☆18Updated 3 years ago
- ☆29Updated 2 years ago
- ☆41Updated 4 years ago
- ☆21Updated 3 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆36Updated 3 months ago
- ☆12Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year