Automated Modelling for Biological Evidence-based Research
☆48Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- Analysis and visualization of RNA-Seq results☆30Mar 18, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Diverse sampling for single-cell datasets☆16Mar 22, 2026Updated 3 weeks ago
- A rapido and lightweight method for PGS computation☆14Mar 30, 2026Updated last week
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated last month
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Based on research papers which discuss Fuzzy concept☆12Jul 19, 2019Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 4 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Mar 26, 2026Updated 2 weeks ago
- ☆14Jul 5, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- This repo uses the pybliometrics Python library to generate a list of papers related to materials science machine learning along with the…☆20Feb 5, 2025Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- ☆12Jul 30, 2019Updated 6 years ago
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated last year
- Mixture of Experts from scratch☆13Apr 12, 2024Updated last year
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Updated this week
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- An implementation of the FuzzyDBSCAN algorithm.☆13Nov 6, 2022Updated 3 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆216Feb 2, 2026Updated 2 months ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- ☆16Mar 18, 2025Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆15Aug 14, 2022Updated 3 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- ☆12Nov 9, 2020Updated 5 years ago