Automated Modelling for Biological Evidence-based Research
☆48Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below
Sorting:
- ☆17Apr 9, 2021Updated 4 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- Analysis and visualization of RNA-Seq results☆30Updated this week
- Diverse sampling for single-cell datasets☆16Jul 23, 2020Updated 5 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated last week
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Nov 17, 2025Updated 4 months ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- ☆12Jul 30, 2019Updated 6 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Jan 16, 2026Updated 2 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- An implementation of the FuzzyDBSCAN algorithm.☆13Nov 6, 2022Updated 3 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 8 months ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆15Aug 14, 2022Updated 3 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 10 months ago
- Points of Significance: Modeling infectious epidemics☆12Oct 31, 2024Updated last year
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- ☆12Feb 6, 2024Updated 2 years ago
- Model zoo for genomics☆174Dec 17, 2025Updated 3 months ago
- Fast motif matching in R☆46Jan 24, 2024Updated 2 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- ☆54Sep 11, 2024Updated last year
- finds rsid with genomic position for feasible input format.☆30Mar 26, 2024Updated last year
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- ☆12Mar 1, 2026Updated 3 weeks ago