Automated Modelling for Biological Evidence-based Research
☆49Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Analysis and visualization of RNA-Seq results☆31May 1, 2026Updated 3 weeks ago
- Diverse sampling for single-cell datasets☆16Mar 22, 2026Updated 2 months ago
- A rapido and lightweight method for PGS computation☆14Apr 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated 2 months ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Updated this week
- ☆14Jul 5, 2022Updated 3 years ago
- This repo uses the pybliometrics Python library to generate a list of papers related to materials science machine learning along with the…☆20Feb 5, 2025Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Mar 2, 2019Updated 7 years ago
- ☆12Jul 30, 2019Updated 6 years ago
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated last year
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35May 14, 2026Updated last week
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 10 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- ☆16Mar 18, 2025Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- ☆14Sep 4, 2020Updated 5 years ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆15Aug 14, 2022Updated 3 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Statistical Distributions from R☆12Apr 24, 2014Updated 12 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated last year
- ☆12Nov 9, 2020Updated 5 years ago
- Some useful VMD scrpits☆10May 24, 2016Updated 9 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- PKSmart: Predicting PK properties using Chemical Structures☆20Sep 26, 2025Updated 7 months ago