☆18Apr 10, 2015Updated 11 years ago
Alternatives and similar repositories for mince
Users that are interested in mince are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 6, 2016Updated 10 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆12Sep 7, 2019Updated 7 years ago
- ☆11Feb 2, 2021Updated 5 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 11 years ago
- Diverse sampling for single-cell datasets☆17Mar 22, 2026Updated 7 months ago
- ☆24Aug 9, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Lightweight String Graph Construction☆11May 10, 2023Updated 3 years ago
- RNA-Seq☆24Aug 29, 2018Updated 8 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- Overlapping Reads COmpression with Minimizers☆16May 19, 2022Updated 4 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆41Apr 12, 2021Updated 5 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆11Sep 11, 2024Updated 2 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆85Aug 26, 2024Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- NeatFreq/Automaton Reference-Free Coverage Reduction Distribution Package☆13Aug 1, 2014Updated 12 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- Low memory multithreaded hash table☆25Mar 23, 2015Updated 11 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆17May 29, 2024Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to create a PRG from a Multiple Sequence Alignment file☆26Sep 10, 2025Updated last year
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Jan 28, 2022Updated 4 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 9 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- parallel algorithms for small hitting set approximations☆11Apr 29, 2021Updated 5 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago