Alternatives and similar repositories for mince

Users that are interested in mince are comparing it to the libraries listed below

• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• lweasel / piquant
  A pipeline to assess the quantification of transcripts.
  ☆19Updated 3 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 6 years ago
• alastair-droop / qsubsec
  Simple tokenised template system for SGE
  ☆10Updated 2 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• gt1 / libmaus2
  collection of data structures and algorithms
  ☆19Updated 6 years ago
• vishnubob / ssw
  Python interface for SIMD Smith-Waterman Library
  ☆38Updated 3 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆52Updated last year
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆32Updated 2 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• OpenGene / SeqMaker.jl
  (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
  ☆24Updated 8 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 7 years ago
• PapenfussLab / HaveYouSwappedYourSamples
  This project contains simple methods to measure sample relatedness and identify potential swaps and contamination
  ☆10Updated 9 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 8 months ago
• COMBINE-lab / maximum-likelihood-relatedness-estimation
  ☆23Updated 4 years ago
• Kingsford-Group / bloomtree
  ☆73Updated 6 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• cartoonist / psi
  Pan-genome Seed Index
  ☆20Updated 7 months ago
• grenaud / schmutzi
  Maximum a posteriori estimate of contamination for ancient samples
  ☆23Updated last year
• thegenemyers / DAZZ_DB
  The Dazzler Data Base
  ☆36Updated 8 months ago
• SaraEl-Metwally / LightAssembler
  Lightweight resources assembly algorithm
  ☆19Updated 8 years ago
• stschiff / sequenceTools
  ☆50Updated 5 months ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• lh3 / proot-wrapper
  Demonstrating the PRoot program
  ☆11Updated 9 years ago
• Kingsford-Group / splitsbt
  ☆18Updated 7 years ago
• wurmlab / genevalidator
  GeneValidator: Identify problems with predicted genes
  ☆47Updated last year
• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆48Updated last week
• sebhtml / ray
  Ray -- Parallel genome assemblies for parallel DNA sequencing
  ☆67Updated 8 years ago