Kingsford-Group / minceLinks
☆18Updated 10 years ago
Alternatives and similar repositories for mince
Users that are interested in mince are comparing it to the libraries listed below
Sorting:
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17Updated 5 years ago
- Parallel Block GZIP☆50Updated 8 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- semi-reference-based short read compression☆11Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- reference free variant assembly☆33Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Library for the Handle Graph abstraction☆23Updated 2 weeks ago
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- Set of tools for viral metagenomics.☆14Updated this week
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- C++ wrapper to tabix indexer☆17Updated this week
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Updated 7 years ago
- Processing WGS aDNA data using the ReichLab protocol☆12Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 7 months ago
- Powerful long read aligner for Ruby☆14Updated last month
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago