Alternatives and similar repositories for PyGenePlexus

Users that are interested in PyGenePlexus are comparing it to the libraries listed below

• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 6 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• datarail / gr_metrics
  ☆15Updated 2 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• idekerlab / G2PT
  ☆17Updated 2 weeks ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• EmanuelGoncalves / crispy
  Python module to analyse CRISPR-based libraries
  ☆13Updated 4 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆25Updated last year
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆26Updated last year
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 3 months ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆23Updated 3 weeks ago
• SchubertLab / epytope
  ☆21Updated 5 months ago
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆37Updated last year
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated last month
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆27Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 4 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• Bayer-Group / cellenium
  Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
  ☆27Updated last year