krishnanlab / PyGenePlexusLinks
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
☆20Updated last week
Alternatives and similar repositories for PyGenePlexus
Users that are interested in PyGenePlexus are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- ☆19Updated 2 months ago
- Refining the impact of genetic evidence on clinical success☆27Updated last year
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆30Updated 3 months ago
- ☆10Updated 4 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- ☆15Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- ☆23Updated 7 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆38Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated 4 months ago
- ☆18Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 3 months ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆13Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Python module to analyse CRISPR-based libraries☆13Updated 4 years ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆39Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 8 months ago
- ☆30Updated 5 months ago