Alternatives and similar repositories for PyGenePlexus

Users that are interested in PyGenePlexus are comparing it to the libraries listed below

• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 3 months ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆22Updated 2 months ago
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated this week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated last month
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• czi-ai / transcriptformer
  ☆38Updated last week
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆22Updated 10 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆31Updated last month
• cellatlas / human
  ☆43Updated 6 months ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 3 months ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 7 months ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• statbiophys / HLAGuessr
  ☆18Updated 3 weeks ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated last month
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 3 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 8 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 6 months ago
• SchubertLab / epytope
  ☆19Updated last month
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆14Updated last month
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated last year