A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
☆20Jan 20, 2026Updated last month
Alternatives and similar repositories for PyGenePlexus
Users that are interested in PyGenePlexus are comparing it to the libraries listed below
Sorting:
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- ☆16Feb 17, 2025Updated last year
- Construct a Physical Map from Linked Reads☆18Apr 5, 2024Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Jan 19, 2026Updated last month
- This is a generic Python client for BioThings APIs☆19Feb 20, 2026Updated last week
- DEvis: an R package for aggregation and visualization of differential expression data☆19Dec 9, 2020Updated 5 years ago
- ☆23Mar 20, 2023Updated 2 years ago
- Courses & workshops led by members of the Krishnan Lab.☆23Sep 7, 2025Updated 5 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- ☆11Aug 21, 2024Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- A python package for showing JBrowse views☆26Jan 3, 2024Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- ☆10Apr 20, 2018Updated 7 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR☆13Aug 23, 2021Updated 4 years ago
- A graph visualisation tool targeted at persistent homology applications.☆11Jul 28, 2020Updated 5 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago