krishnanlab / PyGenePlexusLinks
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
☆20Updated this week
Alternatives and similar repositories for PyGenePlexus
Users that are interested in PyGenePlexus are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆30Updated 2 months ago
- Refining the impact of genetic evidence on clinical success☆26Updated last year
- ☆19Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- ☆10Updated 3 years ago
- ☆15Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆18Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- ☆30Updated 5 months ago
- Summary statistics for repertoires☆17Updated 2 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- Python module to analyse CRISPR-based libraries☆13Updated 4 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 2 weeks ago
- A GenePattern module for running the ssGSEA method☆13Updated 7 months ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 6 months ago
- AlphaRING is a package designed for interpretable, protein structure-based prediction of missense variant deleteriousness.☆20Updated 2 months ago
- Kdrew's scripts for handling protein complex map data☆14Updated 3 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 2 months ago
- ☆23Updated 6 months ago
- Network Visualization using both GUI and Programming☆30Updated 4 months ago