milad73s / AMPDeepLinks
AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning
☆13Updated 3 years ago
Alternatives and similar repositories for AMPDeep
Users that are interested in AMPDeep are comparing it to the libraries listed below
Sorting:
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆113Updated 5 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Updated 2 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Updated 6 months ago
- A software package for computing features of peptides and proteins☆66Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆87Updated last year
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆56Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 5 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Updated 5 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆239Updated last week
- ☆30Updated 2 years ago
- ☆12Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- Machine learning prediction of enzyme optimum pH☆50Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- ☆47Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆54Updated 5 months ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated last week
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Updated 3 weeks ago
- ☆22Updated 3 years ago
- ColabFold protocol☆56Updated last year
- Neural Networks for Protein Sequence Alignment☆135Updated last year