AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning
☆13Aug 15, 2022Updated 3 years ago
Alternatives and similar repositories for AMPDeep
Users that are interested in AMPDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Aug 1, 2025Updated 7 months ago
- The GAN model for designing AMP☆17Aug 19, 2025Updated 7 months ago
- Machine Learning Designs Non-Hemolytic Antimicrobial Peptides☆35Mar 19, 2021Updated 5 years ago
- ☆18Oct 16, 2025Updated 5 months ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆14May 10, 2025Updated 10 months ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆57Nov 26, 2024Updated last year
- Designing antimicrobial peptides (AMPs) is awesome.☆27Updated this week
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- ☆30Jan 21, 2024Updated 2 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆56Mar 17, 2026Updated last week
- AIRFold Protein Structure Prediction System☆11Mar 24, 2025Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- ☆15Jun 24, 2024Updated last year
- Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequences☆17Dec 7, 2022Updated 3 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆17Sep 10, 2024Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆88Aug 2, 2024Updated last year
- Host prediction for phages☆26Nov 6, 2024Updated last year
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆14Nov 24, 2020Updated 5 years ago
- cuNumeric.jl wraps the cuPyNumeric C++ API providing a simple array programming interface that executes code on distributed clusters.☆19Mar 3, 2026Updated 3 weeks ago
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- A fast limit order book implementation in Go, inspired by voyager's winning 2011 QuantCup entry. (Also see kmanley/orderbook, the Python …☆14May 15, 2020Updated 5 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Feb 2, 2026Updated last month
- A Disruptor-Lite implementation in python☆13Mar 8, 2019Updated 7 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆11Oct 9, 2022Updated 3 years ago
- A fast price-time-quantity limit order book (LOB) matching engine written in Rust☆17Jan 11, 2025Updated last year
- A small command line tool to fetch data from Zwift and report on it.☆10Nov 9, 2023Updated 2 years ago
- Minimal fetch is a more aesthetically pleasing neofetch☆14Jun 23, 2025Updated 9 months ago
- ☆13Feb 20, 2024Updated 2 years ago
- Introduction to cyclic peptide simulations and our group's protocols.☆16Sep 21, 2023Updated 2 years ago
- JavaScript library for parsing ANT/Garmin .FIT files☆15Oct 2, 2023Updated 2 years ago
- Solvent accessible surface area calculation☆21Mar 12, 2025Updated last year
- Pan-genome Analysis☆12May 4, 2025Updated 10 months ago