Alternatives and similar repositories for diff-amp:

Users that are interested in diff-amp are comparing it to the libraries listed below

• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆91Updated 2 weeks ago
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆31Updated 2 months ago
• CSUBioGroup / DPFunc
  ☆27Updated 2 weeks ago
• wyky481l / MMCD
  ☆24Updated 4 months ago
• bio-ontology-research-group / deepgo2
  ☆37Updated 6 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆53Updated last month
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆27Updated 2 months ago
• bzho3923 / ProtLGN
  ☆29Updated 7 months ago
• tyang816 / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆54Updated 2 months ago
• biomed-AI / GraphEC
  ☆31Updated 6 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆52Updated last month
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆25Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆62Updated last week
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆53Updated 9 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆51Updated 11 months ago
• CAODH / EquiScore
  ☆68Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆86Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆56Updated last month
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆100Updated this week
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆36Updated 6 months ago
• tymor22 / tm-vec
  ☆65Updated 5 months ago
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆38Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆54Updated 11 months ago
• zhanghaicang / carbonmatrix_public
  ☆110Updated 4 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆30Updated 2 months ago
• AlexanderKroll / ESP
  ☆69Updated 6 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆36Updated 3 months ago
• bzho3923 / CPDiffusion
  ☆21Updated 5 months ago
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆74Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆50Updated last month