Alternatives and similar repositories for AMP-potency-prediction-EvoGradient

Users that are interested in AMP-potency-prediction-EvoGradient are comparing it to the libraries listed below

• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆58Updated 8 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 9 months ago
• PengYueECUST1997 / CLEF
  ☆17Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆44Updated 5 months ago
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 3 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆84Updated 2 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆77Updated 4 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆63Updated 5 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆134Updated last year
• lingxusb / megaDNA
  ☆75Updated last year
• LucaOne / LucaVirus
  LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model
  ☆59Updated this week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆95Updated 2 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• tymor22 / tm-vec
  ☆76Updated last year
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆50Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆102Updated 3 weeks ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆172Updated last year
• mayuefine / c_AMPs-prediction
  ☆90Updated 3 years ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆55Updated 9 months ago
• cansyl / ECPred
  ☆17Updated 3 years ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆13Updated 4 years ago