MicroResearchLab / AMP-potency-prediction-EvoGradient
A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Learning".
☆26Updated 2 months ago
Alternatives and similar repositories for AMP-potency-prediction-EvoGradient
Users that are interested in AMP-potency-prediction-EvoGradient are comparing it to the libraries listed below
Sorting:
- Feature map and function annotation of Proteins☆33Updated 11 months ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆105Updated 8 months ago
- Genomic language model predicts protein co-regulation and function☆77Updated last month
- ☆68Updated 7 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆46Updated last month
- Detection of remote homology by comparison of protein language model representations☆53Updated 5 months ago
- ☆60Updated 6 months ago
- ☆28Updated 11 months ago
- ☆11Updated 5 months ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆27Updated last year
- UniProt Id Mapping through API☆31Updated 7 months ago
- snakemake pipeline for creating trees from sequence sets☆77Updated 3 weeks ago
- ColabFold protocol☆50Updated 7 months ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- Fast protein domain structure embedding+search tool☆20Updated last week
- A domain parser for Alphafold models☆36Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆37Updated 5 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 8 months ago
- Software for predicting translation initiation rates in bacteria☆22Updated 5 months ago
- DeepECtransformer☆24Updated last year
- ☆12Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆36Updated this week
- ☆73Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆37Updated 2 weeks ago
- ☆63Updated 7 months ago
- Diverse Genomic Embedding Benchmark☆45Updated last month
- Generator and regressor neural networks for antimicrobial peptides☆22Updated last year
- A tool for protein and protein complex structure prediction.☆28Updated 2 months ago