MicroResearchLab / AMP-potency-prediction-EvoGradientLinks
A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Learning".
☆41Updated 6 months ago
Alternatives and similar repositories for AMP-potency-prediction-EvoGradient
Users that are interested in AMP-potency-prediction-EvoGradient are comparing it to the libraries listed below
Sorting:
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- Genomic language model predicts protein co-regulation and function☆86Updated 10 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- ☆17Updated last year
- ☆12Updated last year
- Modeling whole bacterial genome as a sequence of proteins.☆86Updated 2 weeks ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- ☆86Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 5 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆55Updated 10 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆42Updated last week
- snakemake pipeline for creating trees from sequence sets☆97Updated this week
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- ☆74Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Updated 5 years ago
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Python framework for doing ancestral sequence reconstruction☆43Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- ☆76Updated last year
- ☆90Updated 3 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆225Updated last week
- DeepECtransformer