Alternatives and similar repositories for RNAseq_coexpression

Users that are interested in RNAseq_coexpression are comparing it to the libraries listed below

• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 4 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 3 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• 123xiaochen / VCFshiny
  ☆29Updated 11 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆48Updated 3 weeks ago
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated last year
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 8 years ago
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 3 months ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆28Updated 2 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆90Updated 6 months ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 5 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 8 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated last month
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 2 years ago
• jtleek / sva-devel
  ☆29Updated last year
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated 11 months ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆34Updated 6 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 3 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆26Updated 3 months ago
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆32Updated 2 months ago
• js2264 / tidyCoverage
  ☆22Updated last year
• becavin-lab / bacnet
  BACNET is a Java based platform to develop website for multi-omics analysis
  ☆13Updated 2 years ago
• giuliospinozzi / arpir
  Automatic RNA-Seq Pipelines with Interactive Report
  ☆25Updated 3 months ago