krishnanlab / RNAseq_coexpression
In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.
☆11Updated last year
Related projects: ⓘ
- ☆24Updated last year
- Explore the cancer relevance of your gene list☆49Updated last week
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆27Updated last month
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- ☆17Updated 4 months ago
- ☆13Updated last year
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆12Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆19Updated 2 weeks ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 3 years ago
- Statistical power studies for multi-omics experiments.☆29Updated last year
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated 9 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆11Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- ☆9Updated 4 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆21Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆11Updated 7 months ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Updated last year
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Updated 9 months ago
- Merge fastq files split over lanes☆18Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆19Updated 9 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆12Updated 8 months ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated last month
- ☆31Updated 8 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated last year