In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.
☆15Aug 4, 2023Updated 3 years ago
Alternatives and similar repositories for RNAseq_coexpression
Users that are interested in RNAseq_coexpression are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Courses & workshops led by members of the Krishnan Lab.☆24Sep 7, 2025Updated last year
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Oct 12, 2026Updated 2 weeks ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- ☆14Oct 29, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genepanel.iobio: generate list of genes based on suspected conditions and phenotypes.☆11Oct 7, 2025Updated last year
- Nascent Transcription Processing Pipeline☆12Apr 6, 2026Updated 6 months ago
- ☆10Sep 27, 2026Updated last month
- Image-based Profiling Handbook☆11Sep 18, 2026Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆34Dec 1, 2025Updated 11 months ago
- ☆10Jul 11, 2020Updated 6 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 10 months ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆12Feb 16, 2026Updated 8 months ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information☆10Jan 19, 2025Updated last year
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆16Aug 15, 2025Updated last year
- PlantGeneAnn: Plant Gene Annotator☆15Oct 19, 2026Updated last week
- A complete waste of time☆15Dec 11, 2022Updated 3 years ago
- Personalized Network-based Anti-Cancer Therapy Appointment☆11Dec 22, 2025Updated 10 months ago
- A novel biclustering algorithm for analyses of transcriptomic data.☆18May 17, 2019Updated 7 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- An R Package for Discovering Rhythmicity in Biological Data with an Interactive Web Interface☆14Mar 7, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆11Dec 12, 2014Updated 11 years ago
- GeneNetwork (1st generation) - will be discontinued☆17Jan 21, 2023Updated 3 years ago
- ☆17Sep 16, 2024Updated 2 years ago
- RNASeq-Pipeline for Quantification and Enrichment Analysis☆12May 30, 2024Updated 2 years ago
- Onboarding materials for the Greene Lab☆33May 12, 2026Updated 5 months ago
- ☆19Nov 8, 2022Updated 3 years ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆39Oct 15, 2026Updated 2 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆40Aug 10, 2023Updated 3 years ago
- Alexa Smart Home Skill for Lennox iComfort Thermostat☆22Jan 2, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆18Jun 28, 2025Updated last year
- ☆12May 21, 2025Updated last year
- Knowledge Independent Network Construction☆12Dec 23, 2025Updated 10 months ago
- taxonomy R packages☆44Apr 16, 2024Updated 2 years ago
- Browser-based GUI HDF Viewer https://broh5.readthedocs.io☆15Dec 26, 2025Updated 10 months ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Sep 24, 2026Updated last month