SchlossLab / mikropml-snakemake-workflowLinks
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
☆13Updated 10 months ago
Alternatives and similar repositories for mikropml-snakemake-workflow
Users that are interested in mikropml-snakemake-workflow are comparing it to the libraries listed below
Sorting:
- User-Friendly R Package for Supervised Machine Learning Pipelines☆60Updated 2 months ago
- An Amazing Shiny App☆17Updated 4 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 5 months ago
- STAMPS 2018 course☆15Updated 7 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆69Updated last year
- ☆20Updated 2 years ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 3 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 7 years ago
- ☆19Updated 2 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last week
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆21Updated last week
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- A model-based visualization method for microbiome data☆16Updated 2 months ago
- a take on ordination plots using ggplot2☆65Updated last year
- Microbial community analysis tools in R☆22Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 2 months ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 6 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated 2 years ago
- scatter pie plot☆66Updated 4 months ago
- fastqcr: Quality Control of Sequencing Data☆76Updated 2 years ago
- Species richness with high diversity☆68Updated 5 months ago
- tidy processing of biological sequences in R☆44Updated last year
- ☆19Updated last week
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- Informatic Sequence Classification Trees☆15Updated 7 months ago
- Linear Decomposition Model☆25Updated 2 years ago