Snakemake template for building reusable and scalable machine learning pipelines with mikropml
☆13Feb 26, 2025Updated last year
Alternatives and similar repositories for mikropml-snakemake-workflow
Users that are interested in mikropml-snakemake-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- User-Friendly R Package for Supervised Machine Learning Pipelines☆60Nov 3, 2025Updated 4 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- ☆14Oct 29, 2024Updated last year
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- Unsupervised Machine Learning project for evaluating 2017-18 NBA player similarity☆13Sep 25, 2019Updated 6 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- random collection of scripts used to process sequences☆10Dec 16, 2025Updated 3 months ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 5 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- ☆18Jan 9, 2026Updated 2 months ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11May 12, 2025Updated 10 months ago
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Jan 11, 2023Updated 3 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆20Nov 6, 2020Updated 5 years ago
- ☆11May 1, 2024Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆49Mar 2, 2026Updated 3 weeks ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17Jan 24, 2025Updated last year
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple a…☆31Feb 21, 2017Updated 9 years ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆18Feb 18, 2026Updated last month
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Updated this week
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated 3 weeks ago
- ☆10Nov 24, 2025Updated 4 months ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- A terribly-simple data base for time series☆14Dec 16, 2025Updated 3 months ago