ocbe-uio / survomicsLinks
Tutorial on survival modeling with omics data
☆11Updated 7 months ago
Alternatives and similar repositories for survomics
Users that are interested in survomics are comparing it to the libraries listed below
Sorting:
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Updated 10 months ago
- ☆20Updated 3 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- R package for computation of (adjusted) rand-index and other such scores☆27Updated last year
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆18Updated 2 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Updated 11 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆39Updated 2 years ago
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated 9 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated this week
- Generate Novel Insights from Gene Correlation Data☆12Updated 3 years ago
- 1000 Genomes Project Metadata R Package☆20Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 5 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- Gene-level general linear mixed model☆23Updated 2 weeks ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Core utilities for single-cell RNA-seq☆12Updated 6 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆13Updated 6 months ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆14Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 10 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Updated 3 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated last week
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 months ago
- Helper script for bioconductor/bioconductor_docker☆13Updated 7 months ago
- SKATE R Utilities☆10Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated last year
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15Updated 5 months ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 10 months ago