ocbe-uio / survomics

Related projects ⓘ

Alternatives and complementary repositories for survomics

• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆19Updated 3 weeks ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆18Updated last month
• csoneson / treeclimbR
  ☆19Updated last week
• stephaniehicks / benchmark-hdf5-clustering
  Benchmarking project for scalable clustering algorithms with large observations and HDF5 files
  ☆8Updated 4 years ago
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated 3 weeks ago
• CenterForStatistics-UGent / SPsimSeq
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Updated 6 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 8 months ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated last year
• StantonLabDartmouth / AppScanGEO
  Source code for ScanGEO Shiny App
  ☆15Updated 2 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆13Updated 2 years ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 3 years ago
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated 6 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated last week
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆12Updated last year
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆32Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆23Updated last week
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆20Updated 5 years ago
• stemangiola / rpharma2020_tidytranscriptomics
  ☆10Updated 4 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆13Updated 3 years ago
• OrsolyaVincze / VinczeEtal2021Nature
  ☆8Updated 2 years ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆37Updated last year
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated 6 months ago
• waldronlab / bioconductor
  Docker container built on bioconductor/bioconductor_docker
  ☆8Updated this week
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 6 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 3 years ago