Alternatives and similar repositories for survomics

Users that are interested in survomics are comparing it to the libraries listed below

• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated 9 months ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆39Updated 2 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 11 months ago
• csoneson / treeclimbR
  ☆20Updated last week
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated 11 months ago
• stephenturner / kgp
  1000 Genomes Project Metadata R Package
  ☆20Updated 2 weeks ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 10 months ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated 6 months ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated last year
• CenterForStatistics-UGent / SPsimSeq
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Updated 11 months ago
• likelet / VSOLassoBag
  A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research
  ☆18Updated 2 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last week
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated last week
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated last month
• maialab / quincunx
  quincunx: an R package to query, download and wrangle PGS Catalog data
  ☆14Updated 3 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated last week
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• jokergoo / bsub
  Send R code/R scripts/shell commands to LSF cluster without leaving R
  ☆26Updated 7 months ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 3 weeks ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 3 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated last month
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated this week
• pachterlab / PCCA
  Code for performing PCA followed by CCA
  ☆18Updated 6 years ago
• Bioconductor / bioc-run
  Helper script for bioconductor/bioconductor_docker
  ☆13Updated 7 months ago