bbglab / openvariant
Read, parse and operate different multiple input file formats with OpenVariant
☆11Updated last month
Alternatives and similar repositories for openvariant:
Users that are interested in openvariant are comparing it to the libraries listed below
- Analyse RNA feature distributions.☆15Updated last month
- ☆29Updated 8 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆25Updated last month
- ☆17Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆17Updated 3 months ago
- ☆22Updated 9 months ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆24Updated 8 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 8 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 9 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆21Updated 3 weeks ago
- End-guided RNA assembler☆15Updated 2 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- ☆14Updated 9 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆28Updated 2 weeks ago
- SNp Exploration and Analysis using EPigenomics data☆10Updated 2 weeks ago
- Computational Analysis of Gene Expression Evolution☆36Updated this week
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month
- ☆14Updated last year
- ☆13Updated 7 months ago