bbglab / openvariant
Read, parse and operate different multiple input file formats with OpenVariant
☆12Updated last week
Alternatives and similar repositories for openvariant:
Users that are interested in openvariant are comparing it to the libraries listed below
- Analyse RNA feature distributions.☆16Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- ☆30Updated 11 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 8 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 11 months ago
- A method for measuring chromosome-specific telomere length from long reads☆21Updated 11 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 2 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 11 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated last week
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- ☆33Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 3 weeks ago
- ☆25Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆18Updated 3 weeks ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated 3 weeks ago
- Computational Analysis of Gene Expression Evolution☆40Updated 2 weeks ago
- ☆18Updated 2 years ago
- Consensus genome annotation using OMA☆23Updated 4 months ago
- ☆17Updated last month