read, parse and operate different multiple input file formats with OpenVariant
☆14Nov 28, 2025Updated 3 months ago
Alternatives and similar repositories for openvariant
Users that are interested in openvariant are comparing it to the libraries listed below
Sorting:
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Feb 21, 2026Updated last week
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- SNp Exploration and Analysis using EPigenomics data☆11Jan 14, 2025Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 weeks ago
- ☆11Feb 12, 2026Updated 2 weeks ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated last month
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 9 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- ☆32Jun 20, 2025Updated 8 months ago
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 10 months ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Nov 23, 2025Updated 3 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 2 months ago
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 3 months ago
- ☆19Feb 15, 2025Updated last year
- Scripting analyses of genomes in Ensembl Plants☆42Jan 1, 2026Updated last month
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 4 months ago
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 4 months ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- ☆21Oct 2, 2024Updated last year
- PGR-TK: Pangenome Research Tool Kit☆21Mar 13, 2025Updated 11 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 2 months ago
- Transfer coordinates across genomes☆23Feb 17, 2026Updated last week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Feb 4, 2026Updated 3 weeks ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 6 months ago
- Machine learning methods for DNA sequence analysis.☆57Feb 2, 2026Updated 3 weeks ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆24Feb 28, 2025Updated last year
- ☆21Aug 8, 2024Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated last year
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated last year
- ☆27Aug 29, 2025Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Mar 27, 2024Updated last year
- A Similarity-Guided Alignment Algorithm☆28Feb 7, 2026Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Updated this week
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Aug 6, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Jun 4, 2024Updated last year