Alternatives and similar repositories for openvariant

Users that are interested in openvariant are comparing it to the libraries listed below

• srbehera / DRAGEN_Analysis
  ☆36Updated last year
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated last week
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆46Updated last month
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated 2 weeks ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated 2 weeks ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆67Updated last month
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆17Updated 10 months ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 2 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated this week
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆16Updated 2 years ago
• cinquin / MEME
  MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
  ☆12Updated 8 years ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated 3 weeks ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 7 months ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆42Updated last year
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆15Updated last week
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 8 months ago
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆19Updated 4 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆58Updated last month
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆56Updated 8 months ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated 11 months ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆30Updated last year
• ConesaLab / SQANTI
  ☆13Updated 2 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• WGLab / NanoRepeat
  NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
  ☆20Updated last month