Noble-Lab / FDRBenchLinks
Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment
☆22Updated 2 months ago
Alternatives and similar repositories for FDRBench
Users that are interested in FDRBench are comparing it to the libraries listed below
Sorting:
- Spectral library searching using approximate nearest neighbor techniques.☆47Updated 8 months ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆15Updated 2 years ago
- A library for QC report based on MultiQC framework☆24Updated this week
- Differential Expression Analysis tool box R lang package for omics data☆47Updated last week
- Absolute quantification package based on quantms.io☆16Updated 3 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆37Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆14Updated last month
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆32Updated last week
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 8 months ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated 3 weeks ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Updated last week
- A label free quantification tool.☆18Updated this week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- ☆67Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago
- A Python interface to proteomics data repositories☆36Updated 6 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated 3 weeks ago
- Quantitative proteomics workflow☆15Updated 3 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated 2 years ago
- ☆36Updated 5 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- Multi-Omics Peptide Generator☆30Updated last month
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Updated 3 years ago