Noble-Lab / FDRBenchLinks
Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment
☆21Updated 2 months ago
Alternatives and similar repositories for FDRBench
Users that are interested in FDRBench are comparing it to the libraries listed below
Sorting:
- Spectral library searching using approximate nearest neighbor techniques.☆47Updated 7 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆14Updated last month
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆32Updated 2 weeks ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- ☆36Updated 4 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated last month
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Updated 3 years ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated last month
- MS/MS prediction for peptides☆24Updated 4 years ago
- ☆27Updated 6 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Quantitative proteomics workflow☆15Updated 3 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆58Updated 2 months ago
- A Python interface to proteomics data repositories☆36Updated 5 months ago
- R-Shiny GUI integrated with the MSstats package family☆18Updated this week
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated 2 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆38Updated this week
- ☆66Updated last year
- A label free quantification tool.☆18Updated 5 months ago
- PDV: an integrative proteomics data viewer☆58Updated 4 months ago
- Data Processing Kitchen Sink for proteomics data☆13Updated 7 months ago
- Absolute quantification package based on quantms.io☆16Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆37Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Updated 3 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- A library for QC report based on MultiQC framework☆22Updated last week