mikarubi / voluseg
pipeline for volumetric cell segmentation
☆12Updated 3 weeks ago
Alternatives and similar repositories for voluseg:
Users that are interested in voluseg are comparing it to the libraries listed below
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- motion correction☆17Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Fast, volumetric cell detection. In development.☆14Updated last week
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Serial-section automated anatomy extension for ScanImage☆12Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last month
- Control and design of two-photon photostimulation experiments☆16Updated last year
- pyqt5 dependent applications for IBL sessions☆26Updated this week
- Browser-based NWB visualization and DANDI exploration☆55Updated this week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated last week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- ☆51Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 8 months ago
- ☆19Updated last year
- Histology processing☆65Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 4 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated this week
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated last week
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 6 months ago
- Region Of Interest Classification and Tracking☆18Updated last week
- Brainways☆16Updated last month
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- ☆34Updated last year