Alternatives and similar repositories for voluseg

Users that are interested in voluseg are comparing it to the libraries listed below

• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 2 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆31Updated 5 years ago
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆11Updated last year
• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆11Updated 4 years ago
• Whitlock-Group / HERBS
  ☆52Updated 11 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 11 months ago
• petersaj / AP_histology
  Histology processing
  ☆67Updated 3 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆150Updated last week
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆11Updated last week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated last year
• datajoint / element-calcium-imaging
  DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
  ☆13Updated 2 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated 3 weeks ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated last week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆75Updated 8 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated this week
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆15Updated 3 weeks ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆36Updated last week
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆28Updated this week
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 3 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆93Updated 8 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆127Updated last year
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 4 months ago
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆17Updated last week
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆16Updated 3 weeks ago