quantixed / TrackMateRLinks
Analysis of TrackMate XML outputs in R
☆13Updated 11 months ago
Alternatives and similar repositories for TrackMateR
Users that are interested in TrackMateR are comparing it to the libraries listed below
Sorting:
- quantixed FIJI update site☆16Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 7 months ago
- ☆11Updated 4 years ago
- ☆19Updated 4 years ago
- Example vignette for dotdotdot software☆18Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Framework for image and flow cytometry analysis☆26Updated 3 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- MethodsJ2☆14Updated 3 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 2 months ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆36Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- The 2023 version of cellPLATO☆15Updated 6 months ago
- ABBA, controlled from python☆13Updated 2 months ago
- ☆10Updated 6 months ago
- R package for visualization of highly multiplexed imaging data☆32Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆47Updated last week
- ImageJ macros and scripts written at the imaging facility MRI☆33Updated 3 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆49Updated 3 years ago
- Lectures for a napari training course☆50Updated last year
- ☆16Updated 10 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Toolbox for the analysis of smFISH images.☆62Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 8 months ago