quantixed / TrackMateRLinks
Analysis of TrackMate XML outputs in R
☆17Updated 3 weeks ago
Alternatives and similar repositories for TrackMateR
Users that are interested in TrackMateR are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- quantixed FIJI update site☆17Updated 3 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Example vignette for dotdotdot software☆18Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated this week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated last year
- ABBA, controlled from python☆18Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- The 2025 version of cellPLATO☆15Updated 2 weeks ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- ☆20Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆14Updated 9 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆18Updated 10 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- Imaging Mass Cytometry (IMC) file type support for napari☆12Updated 2 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆45Updated last month
- Algorithmic and Utility Extensions for the Imaris Program☆20Updated this week
- ImageJ macros and scripts written at the imaging facility MRI☆37Updated last week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Interactive visualization of spatial omics data☆75Updated last week
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago