Alternatives and similar repositories for ophys_etl_pipelines

Users that are interested in ophys_etl_pipelines are comparing it to the libraries listed below

• NeurodataWithoutBorders / nwbinspector
  Tool to help inspect NWB files for compliance with NWB Best Practices
  ☆20Updated last week
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• NeuralEnsemble / neuroConstruct
  neuroConstruct: biophysically detailed neuronal modelling in 3D
  ☆48Updated 2 months ago
• int-brain-lab / iblenv
  Unified environment and Issue tracker for all IBL
  ☆14Updated 3 weeks ago
• neoanalysis / NeoAnalysis
  ☆25Updated 4 years ago
• AllenInstitute / dipde
  Numerical solver for coupled population density equations
  ☆24Updated last year
• auto-pi-lot / autopilot
  Distributed behavioral experiments
  ☆93Updated 2 months ago
• calebweinreb / SNUB
  ☆27Updated 10 months ago
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆24Updated 2 months ago
• catalystneuro / roiextractors
  Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…
  ☆13Updated this week
• dandi / dandi-cli
  DANDI command line client to facilitate common operations
  ☆24Updated this week
• sg-s / crabsort
  🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.
  ☆19Updated 2 years ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆66Updated last month
• AllenInstitute / ipfx
  computes intrinsic cell features from intracellular electrophysiology data
  ☆27Updated 6 months ago
• jbakermans / ManifoldTutorial
  Matlab exercises with solutions to implement and visualise concepts from Sara Solla's talk on World Wide Neuro (Apr 29, 2020)
  ☆20Updated 4 years ago
• int-brain-lab / mtscomp
  Multichannel time series lossless compression in pure Python based on NumPy and zlib
  ☆39Updated last month
• AllenInstitute / sonata
  Collaboration between BBP and AIBS
  ☆58Updated 9 months ago
• int-brain-lab / iblrig
  Main repository for IBL rig code
  ☆22Updated this week
• SpikeInterface / spikesorters
  Python-based module with spike sorter wrappers and a simple API for running them.
  ☆20Updated 3 years ago
• NeurodataWithoutBorders / nwb_tutorial
  Tutorials for learning NWB
  ☆17Updated 2 years ago
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 3 years ago
• datajoint / datajoint-labbook
  DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.
  ☆12Updated 2 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆32Updated last week
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆21Updated 2 years ago
• AllenInstitute / All-active-Workflow
  Creating the code base for All-active Model generation written on top of Bluepyopt
  ☆16Updated 4 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆55Updated last year
• NeuralEnsemble / neurotune
  Package for fitting/optimization of NeuroML models
  ☆18Updated last month
• AllenInstitute / biophys_optimize
  Optimization of single-cell biophysically detailed models
  ☆15Updated 4 years ago
• BlueBrain / Long-range-micro-connectome
  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  ☆10Updated 3 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week