pjotrp / blastxmlparserLinks
Fast big data XML parser and library, written in Ruby
☆18Updated 10 years ago
Alternatives and similar repositories for blastxmlparser
Users that are interested in blastxmlparser are comparing it to the libraries listed below
Sorting:
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆99Updated this week
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 5 years ago
- Tools for querying and analysis of genomic data☆27Updated 3 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- GATB Minia assembly pipeline☆31Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆26Updated last year
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago